Hi syed,
You can use chimera program to check for any clash in your initial
structure and do the manual adjustment if needed.
Once you get a reasonable initial geometry you can carry on your simulation.
Good luck,
Ibrahim
From: owner-amber.scripps.edu [mailto:owner-amber.scripps.edu] On Behalf Of
Syed Tarique Moin
Sent: Friday, February 22, 2008 1:11 AM
To: amber.scripps.edu
Subject: AMBER: (no subject)
Hello,
I am trying to minimize a complex, but i was stuck by the linmin error. I am
attaching output file of minimization.
Thanks in advance
Regards
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Received on Sun Feb 24 2008 - 06:07:42 PST
