AMBER: setting perioding box in AMBER

From: Vijay Manickam Achari <>
Date: Mon, 18 Feb 2008 01:47:17 +0000 (GMT)

Dear experts,

Is that possible in AMBER to determine the box size and shape to our preference?
Normally we use SETBOX command in xleap to put periodic boundary condition. When we use this command , it put rectangle BOX around the residue or molecule.
If at all we want to define our won shape such as monoclinic, is there any way of doing it?

Please advice.


Vijay Manickam Achari
(Phd Student c/o Prof Rauzah Hashim)
Chemistry Department,
University of Malaya,
 Yahoo! Answers - Get better answers from someone who knows. Tryit now.
The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Wed Feb 20 2008 - 06:07:11 PST
Custom Search