Re: AMBER: Entropy calculations using NMODE

From: Eddie Mende <pckboy.gmail.com>
Date: Sat, 02 Feb 2008 07:17:06 -0600

Gut feeling tells me:

T > 0
delta S > 0

and there you go!

Sign must be positive or equal zero :)

But I wish I could see the output of your AMBER job

Regards

Edu
Graduate minion
saurabh agrawal wrote:
> Dear Amber Users,
>
> I have done Nmode calculations and found TSTOT values. But I am not
> able to understand the value I got through TSTOT is (-T deltaS) or (T
> deltaS) . In some previous references authors have used DeltaG (of
> binding) = Delta H - (TSTOT) and in some references it is DeltaG (of
> binding) = Delta H - (-TSTOT).
>
> Kindly reply me in this regard.
>
> Thanking you in advance.
>
> saurabh
>
>
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Received on Sun Feb 03 2008 - 06:07:38 PST
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