Starting installation of Amber9 (serial) at Sat Oct 13 14:13:12 CDT 2007. cd lib; make install make[1]: Entering directory `/usr/local/amber9/src/lib' cpp -traditional -P -xassembler-with-cpp new2oldparm.f > _new2oldparm.f g95 -c -O0 -fno-second-underscore -o new2oldparm.o _new2oldparm.f cpp -traditional -P -xassembler-with-cpp nxtsec.f > _nxtsec.f g95 -c -O0 -fno-second-underscore -o nxtsec.o _nxtsec.f g95 -o new2oldparm.exe new2oldparm.o nxtsec.o mv new2oldparm.exe ../../exe /bin/rm _*.f make[1]: Leaving directory `/usr/local/amber9/src/lib' cd addles; make install make[1]: Entering directory `/usr/local/amber9/src/addles' cpp -traditional -P -xassembler-with-cpp lesmain.f > _lesmain.f g95 -c -O0 -fno-second-underscore -o lesmain.o _lesmain.f cpp -traditional -P -xassembler-with-cpp addspace.f > _addspace.f g95 -c -O0 -fno-second-underscore -o addspace.o _addspace.f cpp -traditional -P -xassembler-with-cpp readprm.f > _readprm.f g95 -c -O0 -fno-second-underscore -o readprm.o _readprm.f cpp -traditional -P -xassembler-with-cpp writprm.f > _writprm.f g95 -c -O0 -fno-second-underscore -o writprm.o _writprm.f cpp -traditional -P -xassembler-with-cpp readcrd.f > _readcrd.f g95 -c -O0 -fno-second-underscore -o readcrd.o _readcrd.f cpp -traditional -P -xassembler-with-cpp writcrd.f > _writcrd.f g95 -c -O0 -fno-second-underscore -o writcrd.o _writcrd.f cpp -traditional -P -xassembler-with-cpp pick.f > _pick.f g95 -c -O0 -fno-second-underscore -o pick.o _pick.f cpp -traditional -P -xassembler-with-cpp rline.f > _rline.f g95 -c -O0 -fno-second-underscore -o rline.o _rline.f cpp -traditional -P -xassembler-with-cpp nxt.f > _nxt.f g95 -c -O0 -fno-second-underscore -o nxt.o _nxt.f cpp -traditional -P -xassembler-with-cpp intgr.f > _intgr.f g95 -c -O0 -fno-second-underscore -o intgr.o _intgr.f cpp -traditional -P -xassembler-with-cpp find.f > _find.f g95 -c -O0 -fno-second-underscore -o find.o _find.f cpp -traditional -P -xassembler-with-cpp of.f > _of.f g95 -c -O0 -fno-second-underscore -o of.o _of.f cpp -traditional -P -xassembler-with-cpp geti.f > _geti.f g95 -c -O0 -fno-second-underscore -o geti.o _geti.f cpp -traditional -P -xassembler-with-cpp unit.f > _unit.f g95 -c -O0 -fno-second-underscore -o unit.o _unit.f cpp -traditional -P -xassembler-with-cpp getc.f > _getc.f g95 -c -O0 -fno-second-underscore -o getc.o _getc.f cpp -traditional -P -xassembler-with-cpp alert.f > _alert.f g95 -c -O0 -fno-second-underscore -o alert.o _alert.f cpp -traditional -P -xassembler-with-cpp echo.f > _echo.f g95 -c -O0 -fno-second-underscore -o echo.o _echo.f cpp -traditional -P -xassembler-with-cpp get4c.f > _get4c.f g95 -c -O0 -fno-second-underscore -o get4c.o _get4c.f cpp -traditional -P -xassembler-with-cpp getd.f > _getd.f g95 -c -O0 -fno-second-underscore -o getd.o _getd.f cpp -traditional -P -xassembler-with-cpp wlesprm.f > _wlesprm.f g95 -c -O0 -fno-second-underscore -o wlesprm.o _wlesprm.f cpp -traditional -P -xassembler-with-cpp lesprm.f > _lesprm.f g95 -c -O0 -fno-second-underscore -o lesprm.o _lesprm.f cpp -traditional -P -xassembler-with-cpp les2prm.f > _les2prm.f g95 -c -O0 -fno-second-underscore -o les2prm.o _les2prm.f cpp -traditional -P -xassembler-with-cpp checksz.f > _checksz.f g95 -c -O0 -fno-second-underscore -o checksz.o _checksz.f cd ../lib; ./Makelist ../lib/random.o ../lib/mexit.o ../lib/nxtsec.o make[2]: Entering directory `/usr/local/amber9/src/lib' cpp -traditional -P -xassembler-with-cpp random.f > _random.f g95 -c -O0 -fno-second-underscore -o random.o _random.f make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' cpp -traditional -P -xassembler-with-cpp mexit.f > _mexit.f g95 -c -O0 -fno-second-underscore -o mexit.o _mexit.f make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' g95 -o addles lesmain.o addspace.o readprm.o writprm.o readcrd.o writcrd.o pick.o rline.o nxt.o intgr.o find.o of.o geti.o unit.o getc.o alert.o echo.o get4c.o getd.o wlesprm.o lesprm.o les2prm.o checksz.o ../lib/random.o ../lib/mexit.o ../lib/nxtsec.o mv addles.exe ../../exe make[1]: Leaving directory `/usr/local/amber9/src/addles' cd sander; make serial make[1]: Entering directory `/usr/local/amber9/src/sander' ./checkserconf cpp -traditional -P -xassembler-with-cpp evb_vars.f > _evb_vars.f g95 -c -O0 -fno-second-underscore -ffree-form -o evb_vars.o _evb_vars.f cpp -traditional -P -xassembler-with-cpp evb_input.f > _evb_input.f g95 -c -O0 -fno-second-underscore -ffree-form -o evb_input.o _evb_input.f cpp -traditional -P -xassembler-with-cpp evb_init.f > _evb_init.f g95 -c -O0 -fno-second-underscore -ffree-form -o evb_init.o _evb_init.f cpp -traditional -P -xassembler-with-cpp evb_alloc.f > _evb_alloc.f g95 -c -O0 -fno-second-underscore -ffree-form -o evb_alloc.o _evb_alloc.f cpp -traditional -P -xassembler-with-cpp evb_dealloc.f > _evb_dealloc.f g95 -c -O0 -fno-second-underscore -ffree-form -o evb_dealloc.o _evb_dealloc.f cpp -traditional -P -xassembler-with-cpp check_input.f > _check_input.f g95 -c -O0 -fno-second-underscore -ffree-form -o check_input.o _check_input.f cpp -traditional -P -xassembler-with-cpp evb_io.f > _evb_io.f g95 -c -O0 -fno-second-underscore -ffree-form -o evb_io.o _evb_io.f cpp -traditional -P -xassembler-with-cpp evb_keywrd.f > _evb_keywrd.f g95 -c -O0 -fno-second-underscore -ffree-form -o evb_keywrd.o _evb_keywrd.f cpp -traditional -P -xassembler-with-cpp exchange_CM.f > _exchange_CM.f g95 -c -O0 -fno-second-underscore -ffree-form -o exchange_CM.o _exchange_CM.f cpp -traditional -P -xassembler-with-cpp evb_mcp.f > _evb_mcp.f g95 -c -O3 -fno-second-underscore -ffree-form -o evb_mcp.o _evb_mcp.f cpp -traditional -P -xassembler-with-cpp evb_force.f > _evb_force.f g95 -c -O3 -fno-second-underscore -ffree-form -o evb_force.o _evb_force.f cpp -traditional -P -xassembler-with-cpp diabatic.f > _diabatic.f g95 -c -O0 -fno-second-underscore -ffree-form -o diabatic.o _diabatic.f cpp -traditional -P -xassembler-with-cpp evb_2stdebug.f > _evb_2stdebug.f g95 -c -O0 -fno-second-underscore -ffree-form -o evb_2stdebug.o _evb_2stdebug.f cpp -traditional -P -xassembler-with-cpp egap_umb_2stdebug.f > _egap_umb_2stdebug.f g95 -c -O0 -fno-second-underscore -ffree-form -o egap_umb_2stdebug.o _egap_umb_2stdebug.f cpp -traditional -P -xassembler-with-cpp exchange_gauss.f > _exchange_gauss.f g95 -c -O0 -fno-second-underscore -ffree-form -o exchange_gauss.o _exchange_gauss.f cpp -traditional -P -xassembler-with-cpp exchange_warshel.f > _exchange_warshel.f g95 -c -O0 -fno-second-underscore -ffree-form -o exchange_warshel.o _exchange_warshel.f cpp -traditional -P -xassembler-with-cpp parms.f > _parms.f g95 -c -O3 -fno-second-underscore -ffree-form -o parms.o _parms.f cpp -traditional -P -xassembler-with-cpp morsify.f > _morsify.f g95 -c -O0 -fno-second-underscore -ffree-form -o morsify.o _morsify.f cpp -traditional -P -xassembler-with-cpp morse_anal2num.f > _morse_anal2num.f g95 -c -O0 -fno-second-underscore -ffree-form -o morse_anal2num.o _morse_anal2num.f cpp -traditional -P -xassembler-with-cpp evb_pimd_init.f > _evb_pimd_init.f g95 -c -O0 -fno-second-underscore -ffree-form -o evb_pimd_init.o _evb_pimd_init.f cpp -traditional -P -xassembler-with-cpp evb_matrix.f > _evb_matrix.f g95 -c -O3 -fno-second-underscore -ffree-form -o evb_matrix.o _evb_matrix.f cpp -traditional -P -xassembler-with-cpp evb_ntrfc.f > _evb_ntrfc.f g95 -c -O0 -fno-second-underscore -ffree-form -o evb_ntrfc.o _evb_ntrfc.f cpp -traditional -P -xassembler-with-cpp out_evb.f > _out_evb.f g95 -c -O3 -fno-second-underscore -ffree-form -o out_evb.o _out_evb.f cpp -traditional -P -xassembler-with-cpp constants.f > _constants.f g95 -c -O3 -fno-second-underscore -ffree-form -o constants.o _constants.f cpp -traditional -P -xassembler-with-cpp stack.f > _stack.f g95 -c -O3 -fno-second-underscore -ffree-form -o stack.o _stack.f cpp -traditional -P -xassembler-with-cpp findmask.f > _findmask.f g95 -c -O0 -fno-second-underscore -ffree-form -o findmask.o _findmask.f cpp -traditional -P -xassembler-with-cpp qmmm_module.f > _qmmm_module.f g95 -c -O3 -fno-second-underscore -ffree-form -o qmmm_module.o _qmmm_module.f cpp -traditional -P -xassembler-with-cpp trace.f > _trace.f g95 -c -O0 -fno-second-underscore -ffree-form -o trace.o _trace.f cpp -traditional -P -xassembler-with-cpp lmod.f > _lmod.f g95 -c -O0 -fno-second-underscore -ffree-form -o lmod.o _lmod.f cpp -traditional -P -xassembler-with-cpp decomp.f > _decomp.f g95 -c -O3 -fno-second-underscore -ffree-form -o decomp.o _decomp.f cpp -traditional -P -xassembler-with-cpp icosasurf.f > _icosasurf.f g95 -c -O3 -fno-second-underscore -ffree-form -o icosasurf.o _icosasurf.f cpp -traditional -P -xassembler-with-cpp pimd_vars.f > _pimd_vars.f g95 -c -O0 -fno-second-underscore -ffree-form -o pimd_vars.o _pimd_vars.f cpp -traditional -P -xassembler-with-cpp egb.f > _egb.f g95 -c -O3 -fno-second-underscore -ffree-form -o egb.o _egb.f cpp -traditional -P -xassembler-with-cpp sa_driver.f > _sa_driver.f g95 -c -O3 -fno-second-underscore -ffree-form -o sa_driver.o _sa_driver.f cpp -traditional -P -xassembler-with-cpp pb_force.f > _pb_force.f g95 -c -O3 -fno-second-underscore -ffree-form -o pb_force.o _pb_force.f cpp -traditional -P -xassembler-with-cpp pb_exmol.f > _pb_exmol.f g95 -c -O3 -fno-second-underscore -ffree-form -o pb_exmol.o _pb_exmol.f cpp -traditional -P -xassembler-with-cpp pb_mpfrc.f > _pb_mpfrc.f g95 -c -O3 -fno-second-underscore -ffree-form -o pb_mpfrc.o _pb_mpfrc.f cpp -traditional -P -xassembler-with-cpp pb_direct.f > _pb_direct.f g95 -c -O3 -fno-second-underscore -ffree-form -o pb_direct.o _pb_direct.f cpp -traditional -P -xassembler-with-cpp pb_list.f > _pb_list.f g95 -c -O3 -fno-second-underscore -ffree-form -o pb_list.o _pb_list.f cpp -traditional -P -xassembler-with-cpp np_force.f > _np_force.f g95 -c -O3 -fno-second-underscore -ffree-form -o np_force.o _np_force.f cpp -traditional -P -xassembler-with-cpp relax_mat.f > _relax_mat.f g95 -c -O3 -fno-second-underscore -ffree-form -o relax_mat.o _relax_mat.f cpp -traditional -P -xassembler-with-cpp nmr.f > _nmr.f g95 -c -O3 -fno-second-underscore -ffree-form -o nmr.o _nmr.f cpp -traditional -P -xassembler-with-cpp multisander.f > _multisander.f g95 -c -O0 -fno-second-underscore -ffree-form -o multisander.o _multisander.f cpp -traditional -P -xassembler-with-cpp fastwt.f > _fastwt.f g95 -c -O3 -fno-second-underscore -ffree-form -o fastwt.o _fastwt.f cpp -traditional -P -xassembler-with-cpp nonbond_list.f > _nonbond_list.f g95 -c -O3 -fno-second-underscore -ffree-form -o nonbond_list.o _nonbond_list.f cpp -traditional -P -xassembler-with-cpp ew_bspline.f > _ew_bspline.f g95 -c -O3 -fno-second-underscore -ffree-form -o ew_bspline.o _ew_bspline.f cpp -traditional -P -xassembler-with-cpp ew_recip.f > _ew_recip.f g95 -c -O3 -fno-second-underscore -ffree-form -o ew_recip.o _ew_recip.f cpp -traditional -P -xassembler-with-cpp amoeba_mdin.f > _amoeba_mdin.f g95 -c -O3 -fno-second-underscore -ffree-form -o amoeba_mdin.o _amoeba_mdin.f cpp -traditional -P -xassembler-with-cpp amoeba_runmd.f > _amoeba_runmd.f g95 -c -O3 -fno-second-underscore -ffree-form -o amoeba_runmd.o _amoeba_runmd.f cpp -traditional -P -xassembler-with-cpp amoeba_multipoles.f > _amoeba_multipoles.f g95 -c -O3 -fno-second-underscore -ffree-form -o amoeba_multipoles.o _amoeba_multipoles.f cpp -traditional -P -xassembler-with-cpp amoeba_induced.f > _amoeba_induced.f g95 -c -O3 -fno-second-underscore -ffree-form -o amoeba_induced.o _amoeba_induced.f cpp -traditional -P -xassembler-with-cpp amoeba_vdw.f > _amoeba_vdw.f g95 -c -O3 -fno-second-underscore -ffree-form -o amoeba_vdw.o _amoeba_vdw.f cpp -traditional -P -xassembler-with-cpp amoeba_adjust.f > _amoeba_adjust.f g95 -c -O3 -fno-second-underscore -ffree-form -o amoeba_adjust.o _amoeba_adjust.f cpp -traditional -P -xassembler-with-cpp amoeba_recip.f > _amoeba_recip.f g95 -c -O3 -fno-second-underscore -ffree-form -o amoeba_recip.o _amoeba_recip.f cpp -traditional -P -xassembler-with-cpp amoeba_valence.f > _amoeba_valence.f g95 -c -O3 -fno-second-underscore -ffree-form -o amoeba_valence.o _amoeba_valence.f cpp -traditional -P -xassembler-with-cpp amoeba_direct.f > _amoeba_direct.f g95 -c -O3 -fno-second-underscore -ffree-form -o amoeba_direct.o _amoeba_direct.f cpp -traditional -P -xassembler-with-cpp amoeba_self.f > _amoeba_self.f g95 -c -O3 -fno-second-underscore -ffree-form -o amoeba_self.o _amoeba_self.f cpp -traditional -P -xassembler-with-cpp amoeba_interface.f > _amoeba_interface.f g95 -c -O3 -fno-second-underscore -ffree-form -o amoeba_interface.o _amoeba_interface.f cpp -traditional -P -xassembler-with-cpp sander.f > _sander.f g95 -c -O0 -fno-second-underscore -ffree-form -o sander.o _sander.f cpp -traditional -P -xassembler-with-cpp trajene.f > _trajene.f g95 -c -O0 -fno-second-underscore -ffree-form -o trajene.o _trajene.f cpp -traditional -P -xassembler-with-cpp cshf.f > _cshf.f g95 -c -O3 -fno-second-underscore -ffree-form -o cshf.o _cshf.f cpp -traditional -P -xassembler-with-cpp nmrcal.f > _nmrcal.f g95 -c -O0 -fno-second-underscore -ffree-form -o nmrcal.o _nmrcal.f cpp -traditional -P -xassembler-with-cpp pearsn.f > _pearsn.f g95 -c -O0 -fno-second-underscore -ffree-form -o pearsn.o _pearsn.f cpp -traditional -P -xassembler-with-cpp printe.f > _printe.f g95 -c -O0 -fno-second-underscore -ffree-form -o printe.o _printe.f cpp -traditional -P -xassembler-with-cpp runmin.f > _runmin.f g95 -c -O3 -fno-second-underscore -ffree-form -o runmin.o _runmin.f cpp -traditional -P -xassembler-with-cpp rdparm.f > _rdparm.f g95 -c -O0 -fno-second-underscore -ffree-form -o rdparm.o _rdparm.f cpp -traditional -P -xassembler-with-cpp mdread.f > _mdread.f g95 -c -O0 -fno-second-underscore -ffree-form -o mdread.o _mdread.f In file _mdread.f:2619 call cnstphread(ix(icpstinf),ix(icpresst),ix(icpptcnt), & 1 In file _mdread.f:1077 subroutine cnstphread(stateinf,resstate,protcnt,trescnt,& 2 Warning (155): Inconsistent types (INTEGER(4)/TYPE(const_ph_info)) in actual argument lists at (1) and (2) cpp -traditional -P -xassembler-with-cpp locmem.f > _locmem.f g95 -c -O0 -fno-second-underscore -ffree-form -o locmem.o _locmem.f cpp -traditional -P -xassembler-with-cpp bintraj.f > _bintraj.f g95 -c -O3 -fno-second-underscore -ffree-form -o bintraj.o _bintraj.f cpp -traditional -P -xassembler-with-cpp runmd.f > _runmd.f g95 -c -O3 -fno-second-underscore -ffree-form -o runmd.o _runmd.f cpp -traditional -P -xassembler-with-cpp getcor.f > _getcor.f g95 -c -O0 -fno-second-underscore -ffree-form -o getcor.o _getcor.f cpp -traditional -P -xassembler-with-cpp degcnt.f > _degcnt.f g95 -c -O3 -fno-second-underscore -ffree-form -o degcnt.o _degcnt.f cpp -traditional -P -xassembler-with-cpp decnvh.f > _decnvh.f g95 -c -O0 -fno-second-underscore -ffree-form -o decnvh.o _decnvh.f cpp -traditional -P -xassembler-with-cpp spatial_fft.f > _spatial_fft.f g95 -c -O3 -fno-second-underscore -ffree-form -o spatial_fft.o _spatial_fft.f cpp -traditional -P -xassembler-with-cpp parallel.f > _parallel.f g95 -c -O0 -fno-second-underscore -ffree-form -o parallel.o _parallel.f cpp -traditional -P -xassembler-with-cpp shake.f > _shake.f g95 -c -O3 -fno-second-underscore -ffree-form -o shake.o _shake.f cpp -traditional -P -xassembler-with-cpp ene.f > _ene.f g95 -c -O3 -fno-second-underscore -ffree-form -o ene.o _ene.f cpp -traditional -P -xassembler-with-cpp mdwrit.f > _mdwrit.f g95 -c -O3 -fno-second-underscore -ffree-form -o mdwrit.o _mdwrit.f cpp -traditional -P -xassembler-with-cpp minrit.f > _minrit.f g95 -c -O0 -fno-second-underscore -ffree-form -o minrit.o _minrit.f cpp -traditional -P -xassembler-with-cpp set.f > _set.f g95 -c -O0 -fno-second-underscore -ffree-form -o set.o _set.f cpp -traditional -P -xassembler-with-cpp dynlib.f > _dynlib.f g95 -c -O3 -fno-second-underscore -ffree-form -o dynlib.o _dynlib.f cpp -traditional -P -xassembler-with-cpp mdfil.f > _mdfil.f g95 -c -O0 -fno-second-underscore -ffree-form -o mdfil.o _mdfil.f cpp -traditional -P -xassembler-with-cpp nmlsrc.f > _nmlsrc.f g95 -c -O0 -fno-second-underscore -ffree-form -o nmlsrc.o _nmlsrc.f cpp -traditional -P -xassembler-with-cpp ew_dipole_recip.f > _ew_dipole_recip.f g95 -c -O3 -fno-second-underscore -ffree-form -o ew_dipole_recip.o _ew_dipole_recip.f cpp -traditional -P -xassembler-with-cpp spatial_dcmp.f > _spatial_dcmp.f g95 -c -O3 -fno-second-underscore -ffree-form -o spatial_dcmp.o _spatial_dcmp.f cpp -traditional -P -xassembler-with-cpp spatial_recip.f > _spatial_recip.f g95 -c -O3 -fno-second-underscore -ffree-form -o spatial_recip.o _spatial_recip.f cpp -traditional -P -xassembler-with-cpp ew_force.f > _ew_force.f g95 -c -O3 -fno-second-underscore -ffree-form -o ew_force.o _ew_force.f cpp -traditional -P -xassembler-with-cpp ew_setup.f > _ew_setup.f g95 -c -O3 -fno-second-underscore -ffree-form -o ew_setup.o _ew_setup.f cpp -traditional -P -xassembler-with-cpp ew_box.f > _ew_box.f g95 -c -O3 -fno-second-underscore -ffree-form -o ew_box.o _ew_box.f cpp -traditional -P -xassembler-with-cpp ew_fft.f > _ew_fft.f g95 -c -O3 -fno-second-underscore -ffree-form -o ew_fft.o _ew_fft.f In file _ew_fft.f:1773 if ( isign == 1) call cfftb(n3,work,table(1,3)) 1 In file _ew_fft.f:765 subroutine cfftb (n,c,wsave) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) In file _ew_fft.f:1758 if ( isign == 1) call cfftb(n2,work,table(1,2)) 1 In file _ew_fft.f:765 subroutine cfftb (n,c,wsave) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) In file _ew_fft.f:1743 if ( isign == 1) call cfftb(n1,work,table(1,1)) 1 In file _ew_fft.f:765 subroutine cfftb (n,c,wsave) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) In file _ew_fft.f:771 call cfftb1 (n,c,wsave,wsave(iw1),wsave(iw2)) 1 In file _ew_fft.f:779 subroutine cfftb1 (n,c,ch,wa,ifac) 2 Warning (155): Inconsistent types (REAL(8)/INTEGER(4)) in actual argument lists at (1) and (2) In file _ew_fft.f:855 call cfftf1 (n,c,wsave,wsave(iw1),wsave(iw2)) 1 In file _ew_fft.f:863 subroutine cfftf1 (n,c,ch,wa,ifac) 2 Warning (155): Inconsistent types (REAL(8)/INTEGER(4)) in actual argument lists at (1) and (2) In file _ew_fft.f:1772 if ( isign == -1) call cfftf(n3,work,table(1,3)) 1 In file _ew_fft.f:849 subroutine cfftf (n,c,wsave) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) In file _ew_fft.f:1757 if ( isign == -1) call cfftf(n2,work,table(1,2)) 1 In file _ew_fft.f:849 subroutine cfftf (n,c,wsave) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) In file _ew_fft.f:1742 if ( isign == -1) call cfftf(n1,work,table(1,1)) 1 In file _ew_fft.f:849 subroutine cfftf (n,c,wsave) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) In file _ew_fft.f:966 call cffti1 (n,wsave(iw1),wsave(iw2)) 1 In file _ew_fft.f:974 subroutine cffti1 (n,wa,ifac) 2 Warning (155): Inconsistent types (REAL(8)/INTEGER(4)) in actual argument lists at (1) and (2) cpp -traditional -P -xassembler-with-cpp short_ene.f > _short_ene.f g95 -c -O3 -fno-second-underscore -ffree-form -o short_ene.o _short_ene.f cpp -traditional -P -xassembler-with-cpp pcshift.f > _pcshift.f g95 -c -O3 -fno-second-underscore -ffree-form -o pcshift.o _pcshift.f cpp -traditional -P -xassembler-with-cpp align.f > _align.f g95 -c -O3 -fno-second-underscore -ffree-form -o align.o _align.f cpp -traditional -P -xassembler-with-cpp rfree.f > _rfree.f g95 -c -O0 -fno-second-underscore -ffree-form -o rfree.o _rfree.f cpp -traditional -P -xassembler-with-cpp rgroup.f > _rgroup.f g95 -c -O0 -fno-second-underscore -ffree-form -o rgroup.o _rgroup.f cpp -traditional -P -xassembler-with-cpp random.f > _random.f g95 -c -O3 -fno-second-underscore -ffree-form -o random.o _random.f cpp -traditional -P -xassembler-with-cpp amopen.f > _amopen.f g95 -c -O0 -fno-second-underscore -ffree-form -o amopen.o _amopen.f cpp -traditional -P -xassembler-with-cpp debug.f > _debug.f g95 -c -O3 -fno-second-underscore -ffree-form -o debug.o _debug.f cpp -traditional -P -xassembler-with-cpp ew_recip_reg.f > _ew_recip_reg.f g95 -c -O3 -fno-second-underscore -ffree-form -o ew_recip_reg.o _ew_recip_reg.f cpp -traditional -P -xassembler-with-cpp ew_handle_dips.f > _ew_handle_dips.f g95 -c -O3 -fno-second-underscore -ffree-form -o ew_handle_dips.o _ew_handle_dips.f cpp -traditional -P -xassembler-with-cpp mexit.f > _mexit.f g95 -c -O0 -fno-second-underscore -ffree-form -o mexit.o _mexit.f cpp -traditional -P -xassembler-with-cpp new_time.f > _new_time.f g95 -c -O3 -fno-second-underscore -ffree-form -o new_time.o _new_time.f cpp -traditional -P -xassembler-with-cpp extra_pts.f > _extra_pts.f g95 -c -O3 -fno-second-underscore -ffree-form -o extra_pts.o _extra_pts.f cpp -traditional -P -xassembler-with-cpp thermo_int.f > _thermo_int.f g95 -c -O0 -fno-second-underscore -ffree-form -o thermo_int.o _thermo_int.f cpp -traditional -P -xassembler-with-cpp matinv.f > _matinv.f g95 -c -O3 -fno-second-underscore -ffree-form -o matinv.o _matinv.f cpp -traditional -P -xassembler-with-cpp assert.f > _assert.f g95 -c -O0 -fno-second-underscore -ffree-form -o assert.o _assert.f cpp -traditional -P -xassembler-with-cpp mmtsb.f > _mmtsb.f g95 -c -O3 -fno-second-underscore -ffree-form -o mmtsb.o _mmtsb.f gcc -c -O2 -m32 -o mmtsb_client.o mmtsb_client.c cpp -traditional -P -xassembler-with-cpp erfcfun.f > _erfcfun.f g95 -c -O3 -fno-second-underscore -ffree-form -o erfcfun.o _erfcfun.f cpp -traditional -P -xassembler-with-cpp veclib.f > _veclib.f g95 -c -O3 -fno-second-underscore -ffree-form -o veclib.o _veclib.f cpp -traditional -P -xassembler-with-cpp is_init.f > _is_init.f g95 -c -O0 -fno-second-underscore -ffree-form -o is_init.o _is_init.f cpp -traditional -P -xassembler-with-cpp constantph.f > _constantph.f g95 -c -O3 -fno-second-underscore -ffree-form -o constantph.o _constantph.f cpp -traditional -P -xassembler-with-cpp prn_dipoles.f > _prn_dipoles.f g95 -c -O3 -fno-second-underscore -ffree-form -o prn_dipoles.o _prn_dipoles.f cpp -traditional -P -xassembler-with-cpp ips.f > _ips.f g95 -c -O3 -fno-second-underscore -ffree-form -o ips.o _ips.f cpp -traditional -P -xassembler-with-cpp sglds.f > _sglds.f g95 -c -O3 -fno-second-underscore -ffree-form -o sglds.o _sglds.f cpp -traditional -P -xassembler-with-cpp qm_mm.f > _qm_mm.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm_mm.o _qm_mm.f cpp -traditional -P -xassembler-with-cpp qm_link_atoms.f > _qm_link_atoms.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm_link_atoms.o _qm_link_atoms.f cpp -traditional -P -xassembler-with-cpp qm_nb_list.f > _qm_nb_list.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm_nb_list.o _qm_nb_list.f cpp -traditional -P -xassembler-with-cpp qm_extract_coords.f > _qm_extract_coords.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm_extract_coords.o _qm_extract_coords.f cpp -traditional -P -xassembler-with-cpp qm_ewald.f > _qm_ewald.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm_ewald.o _qm_ewald.f cpp -traditional -P -xassembler-with-cpp qm_gb.f > _qm_gb.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm_gb.o _qm_gb.f cpp -traditional -P -xassembler-with-cpp qm_zero_charges.f > _qm_zero_charges.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm_zero_charges.o _qm_zero_charges.f cpp -traditional -P -xassembler-with-cpp qm_print_info.f > _qm_print_info.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm_print_info.o _qm_print_info.f cpp -traditional -P -xassembler-with-cpp qm_assign_atom_types.f > _qm_assign_atom_types.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm_assign_atom_types.o _qm_assign_atom_types.f cpp -traditional -P -xassembler-with-cpp qm2_allocate_e_repul.f > _qm2_allocate_e_repul.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_allocate_e_repul.o _qm2_allocate_e_repul.f cpp -traditional -P -xassembler-with-cpp qm2_calc_charges.f > _qm2_calc_charges.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_calc_charges.o _qm2_calc_charges.f cpp -traditional -P -xassembler-with-cpp qm2_calc_rij_and_eqns.f > _qm2_calc_rij_and_eqns.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_calc_rij_and_eqns.o _qm2_calc_rij_and_eqns.f cpp -traditional -P -xassembler-with-cpp qm2_dihed.f > _qm2_dihed.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dihed.o _qm2_dihed.f cpp -traditional -P -xassembler-with-cpp qm2_energy.f > _qm2_energy.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_energy.o _qm2_energy.f cpp -traditional -P -xassembler-with-cpp qm2_fock.f > _qm2_fock.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_fock.o _qm2_fock.f cpp -traditional -P -xassembler-with-cpp qm2_get_qm_forces.f > _qm2_get_qm_forces.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_get_qm_forces.o _qm2_get_qm_forces.f cpp -traditional -P -xassembler-with-cpp qm2_get_qmmm_forces.f > _qm2_get_qmmm_forces.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_get_qmmm_forces.o _qm2_get_qmmm_forces.f cpp -traditional -P -xassembler-with-cpp qm2_h1elec.f > _qm2_h1elec.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_h1elec.o _qm2_h1elec.f cpp -traditional -P -xassembler-with-cpp qm2_hcore_qmqm.f > _qm2_hcore_qmqm.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_hcore_qmqm.o _qm2_hcore_qmqm.f cpp -traditional -P -xassembler-with-cpp qm2_hcore_qmmm.f > _qm2_hcore_qmmm.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_hcore_qmmm.o _qm2_hcore_qmmm.f cpp -traditional -P -xassembler-with-cpp qm2_identify_peptide_links.f > _qm2_identify_peptide_links.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_identify_peptide_links.o _qm2_identify_peptide_links.f cpp -traditional -P -xassembler-with-cpp qm2_load_params_and_allocate.f > _qm2_load_params_and_allocate.f g95 -c -O0 -fno-second-underscore -ffree-form -o qm2_load_params_and_allocate.o _qm2_load_params_and_allocate.f cpp -traditional -P -xassembler-with-cpp qm2_repp.f > _qm2_repp.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_repp.o _qm2_repp.f cpp -traditional -P -xassembler-with-cpp qm2_rotate_qmqm.f > _qm2_rotate_qmqm.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_rotate_qmqm.o _qm2_rotate_qmqm.f cpp -traditional -P -xassembler-with-cpp qm2_scf.f > _qm2_scf.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_scf.o _qm2_scf.f cpp -traditional -P -xassembler-with-cpp qm2_setup_orb_exp.f > _qm2_setup_orb_exp.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_setup_orb_exp.o _qm2_setup_orb_exp.f cpp -traditional -P -xassembler-with-cpp qm2_smallest_number.f > _qm2_smallest_number.f g95 -c -O0 -fno-second-underscore -ffree-form -o qm2_smallest_number.o _qm2_smallest_number.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_module.f > _qm2_dftb_module.f g95 -c -O0 -fno-second-underscore -ffree-form -o qm2_dftb_module.o _qm2_dftb_module.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_broyden.f > _qm2_dftb_broyden.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_broyden.o _qm2_dftb_broyden.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_dispersion_egr.f > _qm2_dftb_dispersion_egr.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_dispersion_egr.o _qm2_dftb_dispersion_egr.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_dispersion_params.f > _qm2_dftb_dispersion_params.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_dispersion_params.o _qm2_dftb_dispersion_params.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_dispersionread.f > _qm2_dftb_dispersionread.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_dispersionread.o _qm2_dftb_dispersionread.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_eglcao.f > _qm2_dftb_eglcao.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_eglcao.o _qm2_dftb_eglcao.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_energy.f > _qm2_dftb_energy.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_energy.o _qm2_dftb_energy.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_ewevge.f > _qm2_dftb_ewevge.f g95 -c -O0 -fno-second-underscore -ffree-form -o qm2_dftb_ewevge.o _qm2_dftb_ewevge.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_externalchgrad.f > _qm2_dftb_externalchgrad.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_externalchgrad.o _qm2_dftb_externalchgrad.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_externalshift.f > _qm2_dftb_externalshift.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_externalshift.o _qm2_dftb_externalshift.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_fermi.f > _qm2_dftb_fermi.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_fermi.o _qm2_dftb_fermi.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_forces.f > _qm2_dftb_forces.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_forces.o _qm2_dftb_forces.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_gamma.f > _qm2_dftb_gamma.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_gamma.o _qm2_dftb_gamma.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_gammamat.f > _qm2_dftb_gammamat.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_gammamat.o _qm2_dftb_gammamat.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_get_qmmm_forces.f > _qm2_dftb_get_qmmm_forces.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_get_qmmm_forces.o _qm2_dftb_get_qmmm_forces.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_gettab.f > _qm2_dftb_gettab.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_gettab.o _qm2_dftb_gettab.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_load_params.f > _qm2_dftb_load_params.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_load_params.o _qm2_dftb_load_params.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_long_range.f > _qm2_dftb_long_range.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_long_range.o _qm2_dftb_long_range.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_main.f > _qm2_dftb_main.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_main.o _qm2_dftb_main.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_my_gradient.f > _qm2_dftb_my_gradient.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_my_gradient.o _qm2_dftb_my_gradient.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_my_mulliken.f > _qm2_dftb_my_mulliken.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_my_mulliken.o _qm2_dftb_my_mulliken.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_repulsiv.f > _qm2_dftb_repulsiv.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_repulsiv.o _qm2_dftb_repulsiv.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_self.f > _qm2_dftb_self.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_self.o _qm2_dftb_self.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_shift.f > _qm2_dftb_shift.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_shift.o _qm2_dftb_shift.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_short_range.f > _qm2_dftb_short_range.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_short_range.o _qm2_dftb_short_range.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_skpar.f > _qm2_dftb_skpar.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_skpar.o _qm2_dftb_skpar.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_slkode.f > _qm2_dftb_slkode.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_slkode.o _qm2_dftb_slkode.f cpp -traditional -P -xassembler-with-cpp qm2_dftb_slktrafo.f > _qm2_dftb_slktrafo.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm2_dftb_slktrafo.o _qm2_dftb_slktrafo.f cpp -traditional -P -xassembler-with-cpp qm_div.f > _qm_div.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm_div.o _qm_div.f cpp -traditional -P -xassembler-with-cpp force.f > _force.f g95 -c -O3 -fno-second-underscore -ffree-form -o force.o _force.f cd ../lib; make sys.a make[2]: Entering directory `/usr/local/amber9/src/lib' cpp -traditional -P -xassembler-with-cpp sys.f > _sys.f g95 -c -O0 -fno-second-underscore -o sys.o _sys.f gcc -c -O2 -m32 -o wallclock.o wallclock.c ar rv sys.a sys.o wallclock.o ar: creating sys.a a - sys.o a - wallclock.o ranlib sys.a make[2]: Leaving directory `/usr/local/amber9/src/lib' cd ../lib; make nxtsec.o make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' cd ../lapack; make make[2]: Entering directory `/usr/local/amber9/src/lapack' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' cpp -traditional -P -xassembler-with-cpp dsyev.f > _dsyev.f g95 -c -O3 -fno-second-underscore -o dsyev.o _dsyev.f cpp -traditional -P -xassembler-with-cpp dsygv.f > _dsygv.f g95 -c -O3 -fno-second-underscore -o dsygv.o _dsygv.f cpp -traditional -P -xassembler-with-cpp dlansy.f > _dlansy.f g95 -c -O3 -fno-second-underscore -o dlansy.o _dlansy.f cpp -traditional -P -xassembler-with-cpp dsytrd.f > _dsytrd.f g95 -c -O3 -fno-second-underscore -o dsytrd.o _dsytrd.f cpp -traditional -P -xassembler-with-cpp dorgtr.f > _dorgtr.f g95 -c -O3 -fno-second-underscore -o dorgtr.o _dorgtr.f cpp -traditional -P -xassembler-with-cpp dsteqr.f > _dsteqr.f g95 -c -O3 -fno-second-underscore -o dsteqr.o _dsteqr.f cpp -traditional -P -xassembler-with-cpp dsterf.f > _dsterf.f g95 -c -O3 -fno-second-underscore -o dsterf.o _dsterf.f cpp -traditional -P -xassembler-with-cpp dlascl.f > _dlascl.f g95 -c -O3 -fno-second-underscore -o dlascl.o _dlascl.f cpp -traditional -P -xassembler-with-cpp dlamch.f > _dlamch.f g95 -c -O0 -fno-second-underscore -o dlamch.o _dlamch.f cpp -traditional -P -xassembler-with-cpp xerbla.f > _xerbla.f g95 -c -O3 -fno-second-underscore -o xerbla.o _xerbla.f cpp -traditional -P -xassembler-with-cpp ilaenv.f > _ilaenv.f g95 -c -O3 -fno-second-underscore -o ilaenv.o _ilaenv.f cpp -traditional -P -xassembler-with-cpp dlassq.f > _dlassq.f g95 -c -O3 -fno-second-underscore -o dlassq.o _dlassq.f cpp -traditional -P -xassembler-with-cpp dsytd2.f > _dsytd2.f g95 -c -O3 -fno-second-underscore -o dsytd2.o _dsytd2.f cpp -traditional -P -xassembler-with-cpp dlatrd.f > _dlatrd.f g95 -c -O3 -fno-second-underscore -o dlatrd.o _dlatrd.f cpp -traditional -P -xassembler-with-cpp dorgql.f > _dorgql.f g95 -c -O3 -fno-second-underscore -o dorgql.o _dorgql.f cpp -traditional -P -xassembler-with-cpp dorgqr.f > _dorgqr.f g95 -c -O3 -fno-second-underscore -o dorgqr.o _dorgqr.f cpp -traditional -P -xassembler-with-cpp dlasrt.f > _dlasrt.f g95 -c -O3 -fno-second-underscore -o dlasrt.o _dlasrt.f cpp -traditional -P -xassembler-with-cpp dlaset.f > _dlaset.f g95 -c -O3 -fno-second-underscore -o dlaset.o _dlaset.f cpp -traditional -P -xassembler-with-cpp dlanst.f > _dlanst.f g95 -c -O3 -fno-second-underscore -o dlanst.o _dlanst.f cpp -traditional -P -xassembler-with-cpp dlaev2.f > _dlaev2.f g95 -c -O3 -fno-second-underscore -o dlaev2.o _dlaev2.f cpp -traditional -P -xassembler-with-cpp dlasr.f > _dlasr.f g95 -c -O3 -fno-second-underscore -o dlasr.o _dlasr.f cpp -traditional -P -xassembler-with-cpp dlapy2.f > _dlapy2.f g95 -c -O3 -fno-second-underscore -o dlapy2.o _dlapy2.f cpp -traditional -P -xassembler-with-cpp dlartg.f > _dlartg.f g95 -c -O3 -fno-second-underscore -o dlartg.o _dlartg.f cpp -traditional -P -xassembler-with-cpp dlae2.f > _dlae2.f g95 -c -O3 -fno-second-underscore -o dlae2.o _dlae2.f cpp -traditional -P -xassembler-with-cpp dorg2r.f > _dorg2r.f g95 -c -O3 -fno-second-underscore -o dorg2r.o _dorg2r.f cpp -traditional -P -xassembler-with-cpp dlarft.f > _dlarft.f g95 -c -O3 -fno-second-underscore -o dlarft.o _dlarft.f cpp -traditional -P -xassembler-with-cpp dlarfb.f > _dlarfb.f g95 -c -O3 -fno-second-underscore -o dlarfb.o _dlarfb.f cpp -traditional -P -xassembler-with-cpp dorg2l.f > _dorg2l.f g95 -c -O3 -fno-second-underscore -o dorg2l.o _dorg2l.f cpp -traditional -P -xassembler-with-cpp dlarfg.f > _dlarfg.f g95 -c -O3 -fno-second-underscore -o dlarfg.o _dlarfg.f cpp -traditional -P -xassembler-with-cpp dlarf.f > _dlarf.f g95 -c -O3 -fno-second-underscore -o dlarf.o _dlarf.f cpp -traditional -P -xassembler-with-cpp dspev.f > _dspev.f g95 -c -O3 -fno-second-underscore -o dspev.o _dspev.f cpp -traditional -P -xassembler-with-cpp dlansp.f > _dlansp.f g95 -c -O3 -fno-second-underscore -o dlansp.o _dlansp.f cpp -traditional -P -xassembler-with-cpp dsptrd.f > _dsptrd.f g95 -c -O3 -fno-second-underscore -o dsptrd.o _dsptrd.f cpp -traditional -P -xassembler-with-cpp dopgtr.f > _dopgtr.f g95 -c -O3 -fno-second-underscore -o dopgtr.o _dopgtr.f cpp -traditional -P -xassembler-with-cpp dppsv.f > _dppsv.f g95 -c -O3 -fno-second-underscore -o dppsv.o _dppsv.f cpp -traditional -P -xassembler-with-cpp dspsv.f > _dspsv.f g95 -c -O3 -fno-second-underscore -o dspsv.o _dspsv.f cpp -traditional -P -xassembler-with-cpp dgeev.f > _dgeev.f g95 -c -O3 -fno-second-underscore -o dgeev.o _dgeev.f cpp -traditional -P -xassembler-with-cpp dsptrs.f > _dsptrs.f g95 -c -O3 -fno-second-underscore -o dsptrs.o _dsptrs.f cpp -traditional -P -xassembler-with-cpp dsptrf.f > _dsptrf.f g95 -c -O3 -fno-second-underscore -o dsptrf.o _dsptrf.f cpp -traditional -P -xassembler-with-cpp dpptrs.f > _dpptrs.f g95 -c -O3 -fno-second-underscore -o dpptrs.o _dpptrs.f cpp -traditional -P -xassembler-with-cpp dpptrf.f > _dpptrf.f g95 -c -O3 -fno-second-underscore -o dpptrf.o _dpptrf.f cpp -traditional -P -xassembler-with-cpp dgebak.f > _dgebak.f g95 -c -O3 -fno-second-underscore -o dgebak.o _dgebak.f cpp -traditional -P -xassembler-with-cpp dtrevc.f > _dtrevc.f g95 -c -O3 -fno-second-underscore -o dtrevc.o _dtrevc.f cpp -traditional -P -xassembler-with-cpp dlacpy.f > _dlacpy.f g95 -c -O3 -fno-second-underscore -o dlacpy.o _dlacpy.f cpp -traditional -P -xassembler-with-cpp dhseqr.f > _dhseqr.f g95 -c -O3 -fno-second-underscore -o dhseqr.o _dhseqr.f cpp -traditional -P -xassembler-with-cpp dorghr.f > _dorghr.f g95 -c -O3 -fno-second-underscore -o dorghr.o _dorghr.f cpp -traditional -P -xassembler-with-cpp dgehrd.f > _dgehrd.f g95 -c -O3 -fno-second-underscore -o dgehrd.o _dgehrd.f cpp -traditional -P -xassembler-with-cpp dgebal.f > _dgebal.f g95 -c -O3 -fno-second-underscore -o dgebal.o _dgebal.f cpp -traditional -P -xassembler-with-cpp dlange.f > _dlange.f g95 -c -O3 -fno-second-underscore -o dlange.o _dlange.f cpp -traditional -P -xassembler-with-cpp dlabad.f > _dlabad.f g95 -c -O3 -fno-second-underscore -o dlabad.o _dlabad.f cpp -traditional -P -xassembler-with-cpp dlahqr.f > _dlahqr.f g95 -c -O3 -fno-second-underscore -o dlahqr.o _dlahqr.f cpp -traditional -P -xassembler-with-cpp dlarfx.f > _dlarfx.f g95 -c -O3 -fno-second-underscore -o dlarfx.o _dlarfx.f cpp -traditional -P -xassembler-with-cpp dlanhs.f > _dlanhs.f g95 -c -O3 -fno-second-underscore -o dlanhs.o _dlanhs.f cpp -traditional -P -xassembler-with-cpp dlaln2.f > _dlaln2.f g95 -c -O3 -fno-second-underscore -o dlaln2.o _dlaln2.f cpp -traditional -P -xassembler-with-cpp dgehd2.f > _dgehd2.f g95 -c -O3 -fno-second-underscore -o dgehd2.o _dgehd2.f cpp -traditional -P -xassembler-with-cpp dlahrd.f > _dlahrd.f g95 -c -O3 -fno-second-underscore -o dlahrd.o _dlahrd.f cpp -traditional -P -xassembler-with-cpp dlanv2.f > _dlanv2.f g95 -c -O3 -fno-second-underscore -o dlanv2.o _dlanv2.f cpp -traditional -P -xassembler-with-cpp dladiv.f > _dladiv.f g95 -c -O3 -fno-second-underscore -o dladiv.o _dladiv.f cpp -traditional -P -xassembler-with-cpp dgerq2.f > _dgerq2.f g95 -c -O3 -fno-second-underscore -o dgerq2.o _dgerq2.f cpp -traditional -P -xassembler-with-cpp dorm2r.f > _dorm2r.f g95 -c -O3 -fno-second-underscore -o dorm2r.o _dorm2r.f cpp -traditional -P -xassembler-with-cpp dlarnv.f > _dlarnv.f g95 -c -O3 -fno-second-underscore -o dlarnv.o _dlarnv.f cpp -traditional -P -xassembler-with-cpp dgeqr2.f > _dgeqr2.f g95 -c -O3 -fno-second-underscore -o dgeqr2.o _dgeqr2.f cpp -traditional -P -xassembler-with-cpp dlaruv.f > _dlaruv.f g95 -c -O3 -fno-second-underscore -o dlaruv.o _dlaruv.f cpp -traditional -P -xassembler-with-cpp dspevd.f > _dspevd.f g95 -c -O3 -fno-second-underscore -o dspevd.o _dspevd.f cpp -traditional -P -xassembler-with-cpp dstedc.f > _dstedc.f g95 -c -O3 -fno-second-underscore -o dstedc.o _dstedc.f cpp -traditional -P -xassembler-with-cpp dopmtr.f > _dopmtr.f g95 -c -O3 -fno-second-underscore -o dopmtr.o _dopmtr.f cpp -traditional -P -xassembler-with-cpp dlaed0.f > _dlaed0.f g95 -c -O3 -fno-second-underscore -o dlaed0.o _dlaed0.f cpp -traditional -P -xassembler-with-cpp dlaed1.f > _dlaed1.f g95 -c -O3 -fno-second-underscore -o dlaed1.o _dlaed1.f cpp -traditional -P -xassembler-with-cpp dlaed7.f > _dlaed7.f g95 -c -O3 -fno-second-underscore -o dlaed7.o _dlaed7.f cpp -traditional -P -xassembler-with-cpp dlaeda.f > _dlaeda.f g95 -c -O3 -fno-second-underscore -o dlaeda.o _dlaeda.f cpp -traditional -P -xassembler-with-cpp dlaed8.f > _dlaed8.f g95 -c -O3 -fno-second-underscore -o dlaed8.o _dlaed8.f cpp -traditional -P -xassembler-with-cpp dlaed9.f > _dlaed9.f g95 -c -O3 -fno-second-underscore -o dlaed9.o _dlaed9.f cpp -traditional -P -xassembler-with-cpp dlamrg.f > _dlamrg.f g95 -c -O3 -fno-second-underscore -o dlamrg.o _dlamrg.f cpp -traditional -P -xassembler-with-cpp dlaed2.f > _dlaed2.f g95 -c -O3 -fno-second-underscore -o dlaed2.o _dlaed2.f cpp -traditional -P -xassembler-with-cpp dlaed3.f > _dlaed3.f g95 -c -O3 -fno-second-underscore -o dlaed3.o _dlaed3.f cpp -traditional -P -xassembler-with-cpp dpotrf.f > _dpotrf.f g95 -c -O3 -fno-second-underscore -o dpotrf.o _dpotrf.f cpp -traditional -P -xassembler-with-cpp dsygst.f > _dsygst.f g95 -c -O3 -fno-second-underscore -o dsygst.o _dsygst.f cpp -traditional -P -xassembler-with-cpp dpotf2.f > _dpotf2.f g95 -c -O3 -fno-second-underscore -o dpotf2.o _dpotf2.f cpp -traditional -P -xassembler-with-cpp dsygs2.f > _dsygs2.f g95 -c -O3 -fno-second-underscore -o dsygs2.o _dsygs2.f cpp -traditional -P -xassembler-with-cpp dlaebz.f > _dlaebz.f g95 -c -O3 -fno-second-underscore -o dlaebz.o _dlaebz.f cpp -traditional -P -xassembler-with-cpp dlagtf.f > _dlagtf.f g95 -c -O3 -fno-second-underscore -o dlagtf.o _dlagtf.f cpp -traditional -P -xassembler-with-cpp dlagts.f > _dlagts.f g95 -c -O3 -fno-second-underscore -o dlagts.o _dlagts.f cpp -traditional -P -xassembler-with-cpp dormqr.f > _dormqr.f g95 -c -O3 -fno-second-underscore -o dormqr.o _dormqr.f cpp -traditional -P -xassembler-with-cpp dormql.f > _dormql.f g95 -c -O3 -fno-second-underscore -o dormql.o _dormql.f cpp -traditional -P -xassembler-with-cpp dorm2l.f > _dorm2l.f g95 -c -O3 -fno-second-underscore -o dorm2l.o _dorm2l.f cpp -traditional -P -xassembler-with-cpp dlaed4.f > _dlaed4.f g95 -c -O3 -fno-second-underscore -o dlaed4.o _dlaed4.f cpp -traditional -P -xassembler-with-cpp dlaed5.f > _dlaed5.f g95 -c -O3 -fno-second-underscore -o dlaed5.o _dlaed5.f cpp -traditional -P -xassembler-with-cpp dlaed6.f > _dlaed6.f g95 -c -O3 -fno-second-underscore -o dlaed6.o _dlaed6.f cpp -traditional -P -xassembler-with-cpp ieeeck.f > _ieeeck.f g95 -c -O3 -fno-second-underscore -o ieeeck.o _ieeeck.f cpp -traditional -P -xassembler-with-cpp dsyevx.f > _dsyevx.f g95 -c -O3 -fno-second-underscore -o dsyevx.o _dsyevx.f cpp -traditional -P -xassembler-with-cpp dsyevd.f > _dsyevd.f g95 -c -O3 -fno-second-underscore -o dsyevd.o _dsyevd.f cpp -traditional -P -xassembler-with-cpp dstebz.f > _dstebz.f g95 -c -O3 -fno-second-underscore -o dstebz.o _dstebz.f cpp -traditional -P -xassembler-with-cpp dstein.f > _dstein.f g95 -c -O3 -fno-second-underscore -o dstein.o _dstein.f cpp -traditional -P -xassembler-with-cpp dormtr.f > _dormtr.f g95 -c -O3 -fno-second-underscore -o dormtr.o _dormtr.f cpp -traditional -P -xassembler-with-cpp zheev.f > _zheev.f g95 -c -O3 -fno-second-underscore -o zheev.o _zheev.f cpp -traditional -P -xassembler-with-cpp lsame.f > _lsame.f g95 -c -O3 -fno-second-underscore -o lsame.o _lsame.f cpp -traditional -P -xassembler-with-cpp zlanhe.f > _zlanhe.f g95 -c -O3 -fno-second-underscore -o zlanhe.o _zlanhe.f cpp -traditional -P -xassembler-with-cpp zlascl.f > _zlascl.f g95 -c -O3 -fno-second-underscore -o zlascl.o _zlascl.f cpp -traditional -P -xassembler-with-cpp zhetrd.f > _zhetrd.f g95 -c -O3 -fno-second-underscore -o zhetrd.o _zhetrd.f cpp -traditional -P -xassembler-with-cpp zungtr.f > _zungtr.f g95 -c -O3 -fno-second-underscore -o zungtr.o _zungtr.f cpp -traditional -P -xassembler-with-cpp zsteqr.f > _zsteqr.f g95 -c -O3 -fno-second-underscore -o zsteqr.o _zsteqr.f cpp -traditional -P -xassembler-with-cpp zlassq.f > _zlassq.f g95 -c -O3 -fno-second-underscore -o zlassq.o _zlassq.f cpp -traditional -P -xassembler-with-cpp zlatrd.f > _zlatrd.f g95 -c -O3 -fno-second-underscore -o zlatrd.o _zlatrd.f cpp -traditional -P -xassembler-with-cpp zhetd2.f > _zhetd2.f g95 -c -O3 -fno-second-underscore -o zhetd2.o _zhetd2.f cpp -traditional -P -xassembler-with-cpp zungql.f > _zungql.f g95 -c -O3 -fno-second-underscore -o zungql.o _zungql.f cpp -traditional -P -xassembler-with-cpp zungqr.f > _zungqr.f g95 -c -O3 -fno-second-underscore -o zungqr.o _zungqr.f cpp -traditional -P -xassembler-with-cpp zlasr.f > _zlasr.f g95 -c -O3 -fno-second-underscore -o zlasr.o _zlasr.f cpp -traditional -P -xassembler-with-cpp zlaset.f > _zlaset.f g95 -c -O3 -fno-second-underscore -o zlaset.o _zlaset.f cpp -traditional -P -xassembler-with-cpp zlacgv.f > _zlacgv.f g95 -c -O3 -fno-second-underscore -o zlacgv.o _zlacgv.f cpp -traditional -P -xassembler-with-cpp zlarfg.f > _zlarfg.f g95 -c -O3 -fno-second-underscore -o zlarfg.o _zlarfg.f cpp -traditional -P -xassembler-with-cpp zung2l.f > _zung2l.f g95 -c -O3 -fno-second-underscore -o zung2l.o _zung2l.f cpp -traditional -P -xassembler-with-cpp zlarft.f > _zlarft.f g95 -c -O3 -fno-second-underscore -o zlarft.o _zlarft.f cpp -traditional -P -xassembler-with-cpp zlarfb.f > _zlarfb.f g95 -c -O3 -fno-second-underscore -o zlarfb.o _zlarfb.f cpp -traditional -P -xassembler-with-cpp zung2r.f > _zung2r.f g95 -c -O3 -fno-second-underscore -o zung2r.o _zung2r.f cpp -traditional -P -xassembler-with-cpp dlapy3.f > _dlapy3.f g95 -c -O3 -fno-second-underscore -o dlapy3.o _dlapy3.f cpp -traditional -P -xassembler-with-cpp zladiv.f > _zladiv.f g95 -c -O3 -fno-second-underscore -o zladiv.o _zladiv.f cpp -traditional -P -xassembler-with-cpp zlarf.f > _zlarf.f g95 -c -O3 -fno-second-underscore -o zlarf.o _zlarf.f ar rv lapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o xerbla.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o ar: creating lapack.a a - dsyev.o a - dsygv.o a - dlansy.o a - dsytrd.o a - dorgtr.o a - dsteqr.o a - dsterf.o a - dlascl.o a - dlamch.o a - xerbla.o a - ilaenv.o a - dlassq.o a - dsytd2.o a - dlatrd.o a - dorgql.o a - dorgqr.o a - dlasrt.o a - dlaset.o a - dlanst.o a - dlaev2.o a - dlasr.o a - dlapy2.o a - dlartg.o a - dlae2.o a - dorg2r.o a - dlarft.o a - dlarfb.o a - dorg2l.o a - dlarfg.o a - dlarf.o a - dspev.o a - dlansp.o a - dsptrd.o a - dopgtr.o a - dppsv.o a - dspsv.o a - dgeev.o a - dsptrs.o a - dsptrf.o a - dpptrs.o a - dpptrf.o a - dgebak.o a - dtrevc.o a - dlacpy.o a - dhseqr.o a - dorghr.o a - dgehrd.o a - dgebal.o a - dlange.o a - dlabad.o a - dlahqr.o a - dlarfx.o a - dlanhs.o a - dlaln2.o a - dgehd2.o a - dlahrd.o a - dlanv2.o a - dladiv.o a - dgerq2.o a - dorm2r.o a - dlarnv.o a - dgeqr2.o a - dlaruv.o a - dspevd.o a - dstedc.o a - dopmtr.o a - dlaed0.o a - dlaed1.o a - dlaed7.o a - dlaeda.o a - dlaed8.o a - dlaed9.o a - dlamrg.o a - dlaed2.o a - dlaed3.o a - dpotrf.o a - dsygst.o a - dpotf2.o a - dsygs2.o a - dlaebz.o a - dlagtf.o a - dlagts.o a - dormqr.o a - dormql.o a - dorm2l.o a - dlaed4.o a - dlaed5.o a - dlaed6.o a - ieeeck.o a - dsyevx.o a - dsyevd.o a - dstebz.o a - dstein.o a - dormtr.o a - zheev.o a - lsame.o a - zlanhe.o a - zlascl.o a - zhetrd.o a - zungtr.o a - zsteqr.o a - zlassq.o a - zlatrd.o a - zhetd2.o a - zungql.o a - zungqr.o a - zlasr.o a - zlaset.o a - zlacgv.o a - zlarfg.o a - zung2l.o a - zlarft.o a - zlarfb.o a - zung2r.o a - dlapy3.o a - zladiv.o a - zlarf.o ranlib lapack.a make[2]: Leaving directory `/usr/local/amber9/src/lapack' cd ../blas; make make[2]: Entering directory `/usr/local/amber9/src/blas' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' cpp -traditional -P -xassembler-with-cpp dasum.f > _dasum.f g95 -c -O3 -fno-second-underscore -o dasum.o _dasum.f cpp -traditional -P -xassembler-with-cpp daxpy.f > _daxpy.f g95 -c -O3 -fno-second-underscore -o daxpy.o _daxpy.f cpp -traditional -P -xassembler-with-cpp dcabs1.f > _dcabs1.f g95 -c -O3 -fno-second-underscore -o dcabs1.o _dcabs1.f cpp -traditional -P -xassembler-with-cpp dcopy.f > _dcopy.f g95 -c -O3 -fno-second-underscore -o dcopy.o _dcopy.f cpp -traditional -P -xassembler-with-cpp ddot.f > _ddot.f g95 -c -O3 -fno-second-underscore -o ddot.o _ddot.f cpp -traditional -P -xassembler-with-cpp dgbmv.f > _dgbmv.f g95 -c -O3 -fno-second-underscore -o dgbmv.o _dgbmv.f cpp -traditional -P -xassembler-with-cpp dgemm.f > _dgemm.f g95 -c -O3 -fno-second-underscore -o dgemm.o _dgemm.f cpp -traditional -P -xassembler-with-cpp dgemv.f > _dgemv.f g95 -c -O3 -fno-second-underscore -o dgemv.o _dgemv.f cpp -traditional -P -xassembler-with-cpp dger.f > _dger.f g95 -c -O3 -fno-second-underscore -o dger.o _dger.f cpp -traditional -P -xassembler-with-cpp dnrm2.f > _dnrm2.f g95 -c -O3 -fno-second-underscore -o dnrm2.o _dnrm2.f cpp -traditional -P -xassembler-with-cpp drot.f > _drot.f g95 -c -O3 -fno-second-underscore -o drot.o _drot.f cpp -traditional -P -xassembler-with-cpp drotg.f > _drotg.f g95 -c -O3 -fno-second-underscore -o drotg.o _drotg.f cpp -traditional -P -xassembler-with-cpp dsbmv.f > _dsbmv.f g95 -c -O3 -fno-second-underscore -o dsbmv.o _dsbmv.f cpp -traditional -P -xassembler-with-cpp dscal.f > _dscal.f g95 -c -O3 -fno-second-underscore -o dscal.o _dscal.f cpp -traditional -P -xassembler-with-cpp dspmv.f > _dspmv.f g95 -c -O3 -fno-second-underscore -o dspmv.o _dspmv.f cpp -traditional -P -xassembler-with-cpp dspr.f > _dspr.f g95 -c -O3 -fno-second-underscore -o dspr.o _dspr.f cpp -traditional -P -xassembler-with-cpp dspr2.f > _dspr2.f g95 -c -O3 -fno-second-underscore -o dspr2.o _dspr2.f cpp -traditional -P -xassembler-with-cpp dswap.f > _dswap.f g95 -c -O3 -fno-second-underscore -o dswap.o _dswap.f cpp -traditional -P -xassembler-with-cpp dsymm.f > _dsymm.f g95 -c -O3 -fno-second-underscore -o dsymm.o _dsymm.f cpp -traditional -P -xassembler-with-cpp dsymv.f > _dsymv.f g95 -c -O3 -fno-second-underscore -o dsymv.o _dsymv.f cpp -traditional -P -xassembler-with-cpp dsyr.f > _dsyr.f g95 -c -O3 -fno-second-underscore -o dsyr.o _dsyr.f cpp -traditional -P -xassembler-with-cpp dsyr2.f > _dsyr2.f g95 -c -O3 -fno-second-underscore -o dsyr2.o _dsyr2.f cpp -traditional -P -xassembler-with-cpp dsyr2k.f > _dsyr2k.f g95 -c -O3 -fno-second-underscore -o dsyr2k.o _dsyr2k.f cpp -traditional -P -xassembler-with-cpp dsyrk.f > _dsyrk.f g95 -c -O3 -fno-second-underscore -o dsyrk.o _dsyrk.f cpp -traditional -P -xassembler-with-cpp dtbmv.f > _dtbmv.f g95 -c -O3 -fno-second-underscore -o dtbmv.o _dtbmv.f cpp -traditional -P -xassembler-with-cpp dtbsv.f > _dtbsv.f g95 -c -O3 -fno-second-underscore -o dtbsv.o _dtbsv.f cpp -traditional -P -xassembler-with-cpp dtpmv.f > _dtpmv.f g95 -c -O3 -fno-second-underscore -o dtpmv.o _dtpmv.f cpp -traditional -P -xassembler-with-cpp dtpsv.f > _dtpsv.f g95 -c -O3 -fno-second-underscore -o dtpsv.o _dtpsv.f cpp -traditional -P -xassembler-with-cpp dtrmm.f > _dtrmm.f g95 -c -O3 -fno-second-underscore -o dtrmm.o _dtrmm.f cpp -traditional -P -xassembler-with-cpp dtrmv.f > _dtrmv.f g95 -c -O3 -fno-second-underscore -o dtrmv.o _dtrmv.f cpp -traditional -P -xassembler-with-cpp dtrsm.f > _dtrsm.f g95 -c -O3 -fno-second-underscore -o dtrsm.o _dtrsm.f cpp -traditional -P -xassembler-with-cpp dtrsv.f > _dtrsv.f g95 -c -O3 -fno-second-underscore -o dtrsv.o _dtrsv.f cpp -traditional -P -xassembler-with-cpp dummy.f > _dummy.f g95 -c -O3 -fno-second-underscore -o dummy.o _dummy.f cpp -traditional -P -xassembler-with-cpp dzasum.f > _dzasum.f g95 -c -O3 -fno-second-underscore -o dzasum.o _dzasum.f cpp -traditional -P -xassembler-with-cpp dznrm2.f > _dznrm2.f g95 -c -O3 -fno-second-underscore -o dznrm2.o _dznrm2.f cpp -traditional -P -xassembler-with-cpp idamax.f > _idamax.f g95 -c -O3 -fno-second-underscore -o idamax.o _idamax.f cpp -traditional -P -xassembler-with-cpp isamax.f > _isamax.f g95 -c -O3 -fno-second-underscore -o isamax.o _isamax.f cpp -traditional -P -xassembler-with-cpp lsame.f > _lsame.f g95 -c -O3 -fno-second-underscore -o lsame.o _lsame.f cpp -traditional -P -xassembler-with-cpp scopy.f > _scopy.f g95 -c -O3 -fno-second-underscore -o scopy.o _scopy.f cpp -traditional -P -xassembler-with-cpp sswap.f > _sswap.f g95 -c -O3 -fno-second-underscore -o sswap.o _sswap.f cpp -traditional -P -xassembler-with-cpp sscal.f > _sscal.f g95 -c -O3 -fno-second-underscore -o sscal.o _sscal.f cpp -traditional -P -xassembler-with-cpp sasum.f > _sasum.f g95 -c -O3 -fno-second-underscore -o sasum.o _sasum.f cpp -traditional -P -xassembler-with-cpp snrm2.f > _snrm2.f g95 -c -O3 -fno-second-underscore -o snrm2.o _snrm2.f cpp -traditional -P -xassembler-with-cpp sdot.f > _sdot.f g95 -c -O3 -fno-second-underscore -o sdot.o _sdot.f cpp -traditional -P -xassembler-with-cpp ssyr2k.f > _ssyr2k.f g95 -c -O3 -fno-second-underscore -o ssyr2k.o _ssyr2k.f cpp -traditional -P -xassembler-with-cpp saxpy.f > _saxpy.f g95 -c -O3 -fno-second-underscore -o saxpy.o _saxpy.f cpp -traditional -P -xassembler-with-cpp sgemv.f > _sgemv.f g95 -c -O3 -fno-second-underscore -o sgemv.o _sgemv.f cpp -traditional -P -xassembler-with-cpp ssyr2.f > _ssyr2.f g95 -c -O3 -fno-second-underscore -o ssyr2.o _ssyr2.f cpp -traditional -P -xassembler-with-cpp ssymv.f > _ssymv.f g95 -c -O3 -fno-second-underscore -o ssymv.o _ssymv.f cpp -traditional -P -xassembler-with-cpp sgemm.f > _sgemm.f g95 -c -O3 -fno-second-underscore -o sgemm.o _sgemm.f cpp -traditional -P -xassembler-with-cpp strmm.f > _strmm.f g95 -c -O3 -fno-second-underscore -o strmm.o _strmm.f cpp -traditional -P -xassembler-with-cpp strmv.f > _strmv.f g95 -c -O3 -fno-second-underscore -o strmv.o _strmv.f cpp -traditional -P -xassembler-with-cpp sger.f > _sger.f g95 -c -O3 -fno-second-underscore -o sger.o _sger.f cpp -traditional -P -xassembler-with-cpp zher2k.f > _zher2k.f g95 -c -O3 -fno-second-underscore -o zher2k.o _zher2k.f cpp -traditional -P -xassembler-with-cpp zswap.f > _zswap.f g95 -c -O3 -fno-second-underscore -o zswap.o _zswap.f cpp -traditional -P -xassembler-with-cpp zgemv.f > _zgemv.f g95 -c -O3 -fno-second-underscore -o zgemv.o _zgemv.f cpp -traditional -P -xassembler-with-cpp zhemv.f > _zhemv.f g95 -c -O3 -fno-second-underscore -o zhemv.o _zhemv.f cpp -traditional -P -xassembler-with-cpp zscal.f > _zscal.f g95 -c -O3 -fno-second-underscore -o zscal.o _zscal.f cpp -traditional -P -xassembler-with-cpp zdotc.f > _zdotc.f g95 -c -O3 -fno-second-underscore -o zdotc.o _zdotc.f cpp -traditional -P -xassembler-with-cpp zaxpy.f > _zaxpy.f g95 -c -O3 -fno-second-underscore -o zaxpy.o _zaxpy.f cpp -traditional -P -xassembler-with-cpp zher2.f > _zher2.f g95 -c -O3 -fno-second-underscore -o zher2.o _zher2.f cpp -traditional -P -xassembler-with-cpp zdscal.f > _zdscal.f g95 -c -O3 -fno-second-underscore -o zdscal.o _zdscal.f cpp -traditional -P -xassembler-with-cpp ztrmv.f > _ztrmv.f g95 -c -O3 -fno-second-underscore -o ztrmv.o _ztrmv.f cpp -traditional -P -xassembler-with-cpp zcopy.f > _zcopy.f g95 -c -O3 -fno-second-underscore -o zcopy.o _zcopy.f cpp -traditional -P -xassembler-with-cpp ztrmm.f > _ztrmm.f g95 -c -O3 -fno-second-underscore -o ztrmm.o _ztrmm.f cpp -traditional -P -xassembler-with-cpp zgemm.f > _zgemm.f g95 -c -O3 -fno-second-underscore -o zgemm.o _zgemm.f cpp -traditional -P -xassembler-with-cpp zgerc.f > _zgerc.f g95 -c -O3 -fno-second-underscore -o zgerc.o _zgerc.f ar rv blas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o ar: creating blas.a a - dasum.o a - daxpy.o a - dcabs1.o a - dcopy.o a - ddot.o a - dgbmv.o a - dgemm.o a - dgemv.o a - dger.o a - dnrm2.o a - drot.o a - drotg.o a - dsbmv.o a - dscal.o a - dspmv.o a - dspr.o a - dspr2.o a - dswap.o a - dsymm.o a - dsymv.o a - dsyr.o a - dsyr2.o a - dsyr2k.o a - dsyrk.o a - dtbmv.o a - dtbsv.o a - dtpmv.o a - dtpsv.o a - dtrmm.o a - dtrmv.o a - dtrsm.o a - dtrsv.o a - dummy.o a - dzasum.o a - dznrm2.o a - idamax.o a - isamax.o a - lsame.o a - scopy.o a - sswap.o a - sscal.o a - sasum.o a - snrm2.o a - sdot.o a - ssyr2k.o a - saxpy.o a - sgemv.o a - ssyr2.o a - ssymv.o a - sgemm.o a - strmm.o a - strmv.o a - sger.o a - zher2k.o a - zswap.o a - zgemv.o a - zhemv.o a - zscal.o a - zdotc.o a - zaxpy.o a - zher2.o a - zdscal.o a - ztrmv.o a - zcopy.o a - ztrmm.o a - zgemm.o a - zgerc.o ranlib blas.a make[2]: Leaving directory `/usr/local/amber9/src/blas' cd ../lmod; make make[2]: Entering directory `/usr/local/amber9/src/lmod' cd xmin; make make[3]: Entering directory `/usr/local/amber9/src/lmod/xmin' Makefile:6: warning: overriding commands for target `.f.o' ../../config.h:82: warning: ignoring old commands for target `.f.o' cpp -traditional -P -xassembler-with-cpp xmin.f > _xmin.f g95 -c -O3 -fno-second-underscore -o xmin.o _xmin.f make[3]: Leaving directory `/usr/local/amber9/src/lmod/xmin' cd lmod; make make[3]: Entering directory `/usr/local/amber9/src/lmod/lmod' Makefile:6: warning: overriding commands for target `.f.o' ../../config.h:82: warning: ignoring old commands for target `.f.o' cpp -traditional -P -xassembler-with-cpp lmod.f > _lmod.f g95 -c -O3 -fno-second-underscore -o lmod.o _lmod.f make[3]: Leaving directory `/usr/local/amber9/src/lmod/lmod' ar rv lmod.a xmin/*.o lmod/*.o ar: creating lmod.a a - xmin/xmin.o a - lmod/lmod.o ranlib lmod.a make[2]: Leaving directory `/usr/local/amber9/src/lmod' cd ../lmod; cp lmodprmtop ../../exe; chmod 0755 ../../exe/lmodprmtop cd ../dcqtp; make libdivcon.a make[2]: Entering directory `/usr/local/amber9/src/dcqtp' cd mod; make libdivcon.a make[3]: Entering directory `/usr/local/amber9/src/dcqtp/mod' cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/param/param_module.F90 > ../obj/param_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/param_module.o ../obj/param_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/math/math_module.F90 > ../obj/math_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/math_module.o ../obj/math_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mm/mm_module.F90 > ../obj/mm_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mm_module.o ../obj/mm_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/error_module.F90 > ../obj/error_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/error_module.o ../obj/error_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_module.F90 > ../obj/pme_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_module.o ../obj/pme_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/nmr/nmr_module.F90 > ../obj/nmr_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/nmr_module.o ../obj/nmr_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/dc_module.F90 > ../obj/dc_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dc_module.o ../obj/dc_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/freq/freq_module.F90 > ../obj/freq_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/freq_module.o ../obj/freq_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/ham/mndod_module.F90 > ../obj/mndod_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mndod_module.o ../obj/mndod_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/ham/pddgpm3_module.F90 > ../obj/pddgpm3_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pddgpm3_module.o ../obj/pddgpm3_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/int_module.F90 > ../obj/int_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/int_module.o ../obj/int_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/mc_module.F90 > ../obj/mc_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mc_module.o ../obj/mc_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/tools_module.F90 > ../obj/tools_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/tools_module.o ../obj/tools_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/ts/ts_module.F90 > ../obj/ts_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/ts_module.o ../obj/ts_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/scf/scf_module.F90 > ../obj/scf_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/scf_module.o ../obj/scf_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/nmr/mndonmr_module.F90 > ../obj/mndonmr_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mndonmr_module.o ../obj/mndonmr_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/min/min_module.F90 > ../obj/min_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/min_module.o ../obj/min_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/element_module.F90 > ../obj/element_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/element_module.o ../obj/element_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/global_module.F90 > ../obj/global_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/global_module.o ../obj/global_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/chg/chgRdKeys.F90 > ../obj/chgRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/chgRdKeys.o ../obj/chgRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/ioRdKeys.F90 > ../obj/ioRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/ioRdKeys.o ../obj/ioRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/ioRdTail.F90 > ../obj/ioRdTail.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/ioRdTail.o ../obj/ioRdTail.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/dcRdKeys.F90 > ../obj/dcRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dcRdKeys.o ../obj/dcRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/dcRdTail.F90 > ../obj/dcRdTail.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dcRdTail.o ../obj/dcRdTail.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/mcRdKeys.F90 > ../obj/mcRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mcRdKeys.o ../obj/mcRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/min/minRdKeys.F90 > ../obj/minRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/minRdKeys.o ../obj/minRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/min/minRdTail.F90 > ../obj/minRdTail.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/minRdTail.o ../obj/minRdTail.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mm/mmRdKeys.F90 > ../obj/mmRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mmRdKeys.o ../obj/mmRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mm/mmRdTail.F90 > ../obj/mmRdTail.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mmRdTail.o ../obj/mmRdTail.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/nmr/nmrRdKeys.F90 > ../obj/nmrRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/nmrRdKeys.o ../obj/nmrRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/nmr/nmrRdTail.F90 > ../obj/nmrRdTail.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/nmrRdTail.o ../obj/nmrRdTail.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/param/paramRdKeys.F90 > ../obj/paramRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/paramRdKeys.o ../obj/paramRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dpmodule.F90 > ../obj/dpmodule.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dpmodule.o ../obj/dpmodule.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/pbRdKeys.F90 > ../obj/pbRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pbRdKeys.o ../obj/pbRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pmeRdKeys.F90 > ../obj/pmeRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pmeRdKeys.o ../obj/pmeRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/scf/scfRdKeys.F90 > ../obj/scfRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/scfRdKeys.o ../obj/scfRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/ts/tsRdKeys.F90 > ../obj/tsRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/tsRdKeys.o ../obj/tsRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/atgrid.F90 > ../obj/atgrid.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/atgrid.o ../obj/atgrid.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/chkres.F90 > ../obj/chkres.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/chkres.o ../obj/chkres.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/clustsub.F90 > ../obj/clustsub.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/clustsub.o ../obj/clustsub.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/cmbcore.F90 > ../obj/cmbcore.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/cmbcore.o ../obj/cmbcore.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/cmbsub.F90 > ../obj/cmbsub.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/cmbsub.o ../obj/cmbsub.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/doferm.F90 > ../obj/doferm.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/doferm.o ../obj/doferm.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/esqr.F90 > ../obj/esqr.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/esqr.o ../obj/esqr.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/esqrfdm.F90 > ../obj/esqrfdm.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/esqrfdm.o ../obj/esqrfdm.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/save_module.F90 > ../obj/save_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/save_module.o ../obj/save_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/frmchk.F90 > ../obj/frmchk.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/frmchk.o ../obj/frmchk.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/fshift.F90 > ../obj/fshift.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/fshift.o ../obj/fshift.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/gensub.F90 > ../obj/gensub.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/gensub.o ../obj/gensub.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/gridafnc.F90 > ../obj/gridafnc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/gridafnc.o ../obj/gridafnc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/gridrfnc.F90 > ../obj/gridrfnc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/gridrfnc.o ../obj/gridrfnc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/mixgrid.F90 > ../obj/mixgrid.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mixgrid.o ../obj/mixgrid.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/mkgrid.F90 > ../obj/mkgrid.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mkgrid.o ../obj/mkgrid.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/pgridafnc.F90 > ../obj/pgridafnc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pgridafnc.o ../obj/pgridafnc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/pgridrfnc.F90 > ../obj/pgridrfnc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pgridrfnc.o ../obj/pgridrfnc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/resgrid.F90 > ../obj/resgrid.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/resgrid.o ../obj/resgrid.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/setncell.F90 > ../obj/setncell.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/setncell.o ../obj/setncell.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/dc/sproc.F90 > ../obj/sproc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/sproc.o ../obj/sproc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/freq/freq.F90 > ../obj/freq.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/freq.o ../obj/freq.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/freq/hsep.F90 > ../obj/hsep.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/hsep.o ../obj/hsep.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/freq/freqRdKeys.F90 > ../obj/freqRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/freqRdKeys.o ../obj/freqRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/freq/freqRdTail.F90 > ../obj/freqRdTail.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/freqRdTail.o ../obj/freqRdTail.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/ham/hamRdKeys.F90 > ../obj/hamRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/hamRdKeys.o ../obj/hamRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/ham/mndo_module.F90 > ../obj/mndo_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mndo_module.o ../obj/mndo_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/ham/am1_module.F90 > ../obj/am1_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/am1_module.o ../obj/am1_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/ham/pm3_module.F90 > ../obj/pm3_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pm3_module.o ../obj/pm3_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/aijm.F90 > ../obj/aijm.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/aijm.o ../obj/aijm.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/attrecurse.F90 > ../obj/attrecurse.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/attrecurse.o ../obj/attrecurse.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/ddpo.F90 > ../obj/ddpo.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/ddpo.o ../obj/ddpo.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/diat.F90 > ../obj/diat.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/diat.o ../obj/diat.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/ecd.F90 > ../obj/ecd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/ecd.o ../obj/ecd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/electricfield.F90 > ../obj/electricfield.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/electricfield.o ../obj/electricfield.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/erecursive.F90 > ../obj/erecursive.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/erecursive.o ../obj/erecursive.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/FmT.F90 > ../obj/FmT.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/FmT.o ../obj/FmT.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/inighd.F90 > ../obj/inighd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/inighd.o ../obj/inighd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/intdd1.F90 > ../obj/intdd1.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/intdd1.o ../obj/intdd1.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/intdd2.F90 > ../obj/intdd2.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/intdd2.o ../obj/intdd2.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/intdd3.F90 > ../obj/intdd3.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/intdd3.o ../obj/intdd3.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/intdd4.F90 > ../obj/intdd4.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/intdd4.o ../obj/intdd4.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/intdd5.F90 > ../obj/intdd5.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/intdd5.o ../obj/intdd5.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/intdd6.F90 > ../obj/intdd6.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/intdd6.o ../obj/intdd6.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/intdd.F90 > ../obj/intdd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/intdd.o ../obj/intdd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/intdp.F90 > ../obj/intdp.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/intdp.o ../obj/intdp.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/intds.F90 > ../obj/intds.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/intds.o ../obj/intds.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/intpd.F90 > ../obj/intpd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/intpd.o ../obj/intpd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/intsd.F90 > ../obj/intsd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/intsd.o ../obj/intsd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/localdd.F90 > ../obj/localdd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/localdd.o ../obj/localdd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/localdp.F90 > ../obj/localdp.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/localdp.o ../obj/localdp.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/localds.F90 > ../obj/localds.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/localds.o ../obj/localds.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/localpd.F90 > ../obj/localpd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/localpd.o ../obj/localpd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/localsd.F90 > ../obj/localsd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/localsd.o ../obj/localsd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/overlap.F90 > ../obj/overlap.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/overlap.o ../obj/overlap.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/overlp.F90 > ../obj/overlp.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/overlp.o ../obj/overlp.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/repuld.F90 > ../obj/repuld.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/repuld.o ../obj/repuld.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/repul.F90 > ../obj/repul.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/repul.o ../obj/repul.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/sabt.F90 > ../obj/sabt.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/sabt.o ../obj/sabt.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/setdorb.F90 > ../obj/setdorb.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/setdorb.o ../obj/setdorb.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/slow.F90 > ../obj/slow.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/slow.o ../obj/slow.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/slowi.F90 > ../obj/slowi.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/slowi.o ../obj/slowi.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/intRdKeys.F90 > ../obj/intRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/intRdKeys.o ../obj/intRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/getversion.F90 > ../obj/getversion.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/getversion.o ../obj/getversion.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/header.F90 > ../obj/header.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/header.o ../obj/header.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/printen.F90 > ../obj/printen.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/printen.o ../obj/printen.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/printpar.F90 > ../obj/printpar.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/printpar.o ../obj/printpar.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/printsub.F90 > ../obj/printsub.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/printsub.o ../obj/printsub.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdcoord.F90 > ../obj/rdcoord.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdcoord.o ../obj/rdcoord.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdbelly.F90 > ../obj/rdbelly.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdbelly.o ../obj/rdbelly.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdbox.F90 > ../obj/rdbox.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdbox.o ../obj/rdbox.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdchemix.F90 > ../obj/rdchemix.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdchemix.o ../obj/rdchemix.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdcluster.F90 > ../obj/rdcluster.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdcluster.o ../obj/rdcluster.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdcomb.F90 > ../obj/rdcomb.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdcomb.o ../obj/rdcomb.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rddmx.F90 > ../obj/rddmx.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rddmx.o ../obj/rddmx.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rddos.F90 > ../obj/rddos.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rddos.o ../obj/rddos.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdgrid.F90 > ../obj/rdgrid.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdgrid.o ../obj/rdgrid.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdgroup.F90 > ../obj/rdgroup.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdgroup.o ../obj/rdgroup.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdguess.F90 > ../obj/rdguess.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdguess.o ../obj/rdguess.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdhess.F90 > ../obj/rdhess.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdhess.o ../obj/rdhess.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdint.F90 > ../obj/rdint.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdint.o ../obj/rdint.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdkeys.F90 > ../obj/rdkeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdkeys.o ../obj/rdkeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdlist.F90 > ../obj/rdlist.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdlist.o ../obj/rdlist.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdneighb.F90 > ../obj/rdneighb.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdneighb.o ../obj/rdneighb.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdnext.F90 > ../obj/rdnext.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdnext.o ../obj/rdnext.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdnmr.F90 > ../obj/rdnmr.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdnmr.o ../obj/rdnmr.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdnum.F90 > ../obj/rdnum.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdnum.o ../obj/rdnum.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdpdb.F90 > ../obj/rdpdb.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdpdb.o ../obj/rdpdb.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdprtvec.F90 > ../obj/rdprtvec.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdprtvec.o ../obj/rdprtvec.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdrestraints.F90 > ../obj/rdrestraints.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdrestraints.o ../obj/rdrestraints.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdrst.F90 > ../obj/rdrst.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdrst.o ../obj/rdrst.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdsub.F90 > ../obj/rdsub.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdsub.o ../obj/rdsub.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdtail.F90 > ../obj/rdtail.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdtail.o ../obj/rdtail.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mm/ljglobals.F90 > ../obj/ljglobals.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/ljglobals.o ../obj/ljglobals.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdvdw.F90 > ../obj/rdvdw.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdvdw.o ../obj/rdvdw.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdword.F90 > ../obj/rdword.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdword.o ../obj/rdword.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/rdxyz.F90 > ../obj/rdxyz.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rdxyz.o ../obj/rdxyz.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtchg.F90 > ../obj/wrtchg.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtchg.o ../obj/wrtchg.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtcoor.F90 > ../obj/wrtcoor.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtcoor.o ../obj/wrtcoor.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtdefaultkeys.F90 > ../obj/wrtdefaultkeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtdefaultkeys.o ../obj/wrtdefaultkeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtdiv.F90 > ../obj/wrtdiv.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtdiv.o ../obj/wrtdiv.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtdmx.F90 > ../obj/wrtdmx.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtdmx.o ../obj/wrtdmx.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtgrd.F90 > ../obj/wrtgrd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtgrd.o ../obj/wrtgrd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrthss.F90 > ../obj/wrthss.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrthss.o ../obj/wrthss.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtint.F90 > ../obj/wrtint.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtint.o ../obj/wrtint.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtpdb.F90 > ../obj/wrtpdb.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtpdb.o ../obj/wrtpdb.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtqma.F90 > ../obj/wrtqma.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtqma.o ../obj/wrtqma.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtrep.F90 > ../obj/wrtrep.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtrep.o ../obj/wrtrep.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtrst.F90 > ../obj/wrtrst.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtrst.o ../obj/wrtrst.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrttim.F90 > ../obj/wrttim.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrttim.o ../obj/wrttim.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtvec.F90 > ../obj/wrtvec.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtvec.o ../obj/wrtvec.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtvecsub.F90 > ../obj/wrtvecsub.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtvecsub.o ../obj/wrtvecsub.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/io/wrtxyz.F90 > ../obj/wrtxyz.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wrtxyz.o ../obj/wrtxyz.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/block.F90 > ../obj/block.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/block.o ../obj/block.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/denful.F90 > ../obj/denful.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/denful.o ../obj/denful.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/densub.F90 > ../obj/densub.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/densub.o ../obj/densub.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/densubfdm.F90 > ../obj/densubfdm.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/densubfdm.o ../obj/densubfdm.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/divcon.F90 > ../obj/divcon.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/divcon.o ../obj/divcon.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/min/geoopt_module.F90 > ../obj/geoopt_module.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/geoopt_module.o ../obj/geoopt_module.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/edriver.F90 > ../obj/edriver.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/edriver.o ../obj/edriver.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/mosub.F90 > ../obj/mosub.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mosub.o ../obj/mosub.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/mosubfdm.F90 > ../obj/mosubfdm.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mosubfdm.o ../obj/mosubfdm.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/mosubfdmx.F90 > ../obj/mosubfdmx.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mosubfdmx.o ../obj/mosubfdmx.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/mainRdKeys.F90 > ../obj/mainRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mainRdKeys.o ../obj/mainRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/math/diag.F90 > ../obj/diag.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/diag.o ../obj/diag.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/math/diagp.F90 > ../obj/diagp.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/diagp.o ../obj/diagp.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/math/fourier.F90 > ../obj/fourier.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/fourier.o ../obj/fourier.f In file ../obj/fourier.f:64 call fourn(data,nn,3,isign) 1 In file ../obj/fourier.f:71 SUBROUTINE FOURN(DATA,NN,NDIM,ISIGN) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) In file ../obj/fourier.f:28 call fourn(data,nn,3,isign) 1 In file ../obj/fourier.f:71 SUBROUTINE FOURN(DATA,NN,NDIM,ISIGN) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/math/lsolve.F90 > ../obj/lsolve.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/lsolve.o ../obj/lsolve.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/math/math.F90 > ../obj/math.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/math.o ../obj/math.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/math/normalization.F90 > ../obj/normalization.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/normalization.o ../obj/normalization.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/math/pdsyevd_driver.F90 > ../obj/pdsyevd_driver.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pdsyevd_driver.o ../obj/pdsyevd_driver.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/math/pdsyevx_driver.F90 > ../obj/pdsyevx_driver.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pdsyevx_driver.o ../obj/pdsyevx_driver.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/math/zheev.F90 > ../obj/zheev.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/zheev.o ../obj/zheev.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/boxmove.F90 > ../obj/boxmove.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/boxmove.o ../obj/boxmove.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/boxstep.F90 > ../obj/boxstep.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/boxstep.o ../obj/boxstep.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/dovir.F90 > ../obj/dovir.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dovir.o ../obj/dovir.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/gcartmc.F90 > ../obj/gcartmc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/gcartmc.o ../obj/gcartmc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/getrforc.F90 > ../obj/getrforc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/getrforc.o ../obj/getrforc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/mccopy.F90 > ../obj/mccopy.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mccopy.o ../obj/mccopy.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/mcsetup.F90 > ../obj/mcsetup.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mcsetup.o ../obj/mcsetup.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/nptdriver.F90 > ../obj/nptdriver.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/nptdriver.o ../obj/nptdriver.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/nvtdriver.F90 > ../obj/nvtdriver.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/nvtdriver.o ../obj/nvtdriver.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/resmove.F90 > ../obj/resmove.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/resmove.o ../obj/resmove.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/resstep.F90 > ../obj/resstep.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/resstep.o ../obj/resstep.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/rottr.F90 > ../obj/rottr.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rottr.o ../obj/rottr.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/setbox.F90 > ../obj/setbox.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/setbox.o ../obj/setbox.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mc/submove.F90 > ../obj/submove.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/submove.o ../obj/submove.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocatevars.F90 > ../obj/allocatevars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocatevars.o ../obj/allocatevars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/deallocatevars.F90 > ../obj/deallocatevars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/deallocatevars.o ../obj/deallocatevars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocateDcVars.F90 > ../obj/allocateDcVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocateDcVars.o ../obj/allocateDcVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocateIntVars.F90 > ../obj/allocateIntVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocateIntVars.o ../obj/allocateIntVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocateMmVars.F90 > ../obj/allocateMmVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocateMmVars.o ../obj/allocateMmVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocateFreqVars.F90 > ../obj/allocateFreqVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocateFreqVars.o ../obj/allocateFreqVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocateGuessVars.F90 > ../obj/allocateGuessVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocateGuessVars.o ../obj/allocateGuessVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocateMcVars.F90 > ../obj/allocateMcVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocateMcVars.o ../obj/allocateMcVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocateMinVars.F90 > ../obj/allocateMinVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocateMinVars.o ../obj/allocateMinVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocateNmrVars.F90 > ../obj/allocateNmrVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocateNmrVars.o ../obj/allocateNmrVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocateParamVars.F90 > ../obj/allocateParamVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocateParamVars.o ../obj/allocateParamVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocatePmeVars.F90 > ../obj/allocatePmeVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocatePmeVars.o ../obj/allocatePmeVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocateScrfVars.F90 > ../obj/allocateScrfVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocateScrfVars.o ../obj/allocateScrfVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocateToolsVars.F90 > ../obj/allocateToolsVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocateToolsVars.o ../obj/allocateToolsVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/min/bsrch.F90 > ../obj/bsrch.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/bsrch.o ../obj/bsrch.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/min/diislb.F90 > ../obj/diislb.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/diislb.o ../obj/diislb.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/min/diisub.F90 > ../obj/diisub.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/diisub.o ../obj/diisub.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/min/geoopt.F90 > ../obj/geoopt.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/geoopt.o ../obj/geoopt.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/min/getdir.F90 > ../obj/getdir.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/getdir.o ../obj/getdir.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/min/lbfgs.F90 > ../obj/lbfgs.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/lbfgs.o ../obj/lbfgs.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/min/linmin.F90 > ../obj/linmin.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/linmin.o ../obj/linmin.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mm/getmm.F90 > ../obj/getmm.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/getmm.o ../obj/getmm.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mm/getpep.F90 > ../obj/getpep.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/getpep.o ../obj/getpep.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mm/ljint.F90 > ../obj/ljint.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/ljint.o ../obj/ljint.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mm/mmroutines.F90 > ../obj/mmroutines.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mmroutines.o ../obj/mmroutines.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mm/restraint.F90 > ../obj/restraint.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/restraint.o ../obj/restraint.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mm/mmDriver.F90 > ../obj/mmDriver.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mmDriver.o ../obj/mmDriver.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mpi/balance.F90 > ../obj/balance.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/balance.o ../obj/balance.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mpi/set_mpi_init.F90 > ../obj/set_mpi_init.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/set_mpi_init.o ../obj/set_mpi_init.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/nmr/assignbasis.F90 > ../obj/assignbasis.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/assignbasis.o ../obj/assignbasis.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/nmr/chshift.F90 > ../obj/chshift.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/chshift.o ../obj/chshift.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/nmr/nmrdenful.F90 > ../obj/nmrdenful.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/nmrdenful.o ../obj/nmrdenful.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/nmr/nmrdensub.F90 > ../obj/nmrdensub.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/nmrdensub.o ../obj/nmrdensub.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/nmr/nmrdmx.F90 > ../obj/nmrdmx.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/nmrdmx.o ../obj/nmrdmx.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/nmr/nmresqr.F90 > ../obj/nmresqr.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/nmresqr.o ../obj/nmresqr.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/nmr/oethccs.F90 > ../obj/oethccs.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/oethccs.o ../obj/oethccs.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/param/coppnt.F90 > ../obj/coppnt.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/coppnt.o ../obj/coppnt.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/param/error.F90 > ../obj/error.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/error.o ../obj/error.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/param/loop.F90 > ../obj/loop.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/loop.o ../obj/loop.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/param/parop2.F90 > ../obj/parop2.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/parop2.o ../obj/parop2.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/param/parop.F90 > ../obj/parop.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/parop.o ../obj/parop.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/param/recalc.F90 > ../obj/recalc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/recalc.o ../obj/recalc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/param/tstpnt.F90 > ../obj/tstpnt.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/tstpnt.o ../obj/tstpnt.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/chk_run_delphi.F90 > ../obj/chk_run_delphi.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/chk_run_delphi.o ../obj/chk_run_delphi.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/divpb.F90 > ../obj/divpb.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/divpb.o ../obj/divpb.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dpaccelerate.F90 > ../obj/dpaccelerate.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dpaccelerate.o ../obj/dpaccelerate.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dpchargegrid.F90 > ../obj/dpchargegrid.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dpchargegrid.o ../obj/dpchargegrid.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dpcollectsurfcharge.F90 > ../obj/dpcollectsurfcharge.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dpcollectsurfcharge.o ../obj/dpcollectsurfcharge.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dpfinesurfprep.F90 > ../obj/dpfinesurfprep.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dpfinesurfprep.o ../obj/dpfinesurfprep.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dpfinesurfacc.F90 > ../obj/dpfinesurfacc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dpfinesurfacc.o ../obj/dpfinesurfacc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dpfinesurfrelax.F90 > ../obj/dpfinesurfrelax.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dpfinesurfrelax.o ../obj/dpfinesurfrelax.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dpgetmol.F90 > ../obj/dpgetmol.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dpgetmol.o ../obj/dpgetmol.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dpinit.F90 > ../obj/dpinit.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dpinit.o ../obj/dpinit.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dploop.F90 > ../obj/dploop.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dploop.o ../obj/dploop.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dpmakegrid.F90 > ../obj/dpmakegrid.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dpmakegrid.o ../obj/dpmakegrid.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dpmakesurface.F90 > ../obj/dpmakesurface.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dpmakesurface.o ../obj/dpmakesurface.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dpsetepsilon.F90 > ../obj/dpsetepsilon.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dpsetepsilon.o ../obj/dpsetepsilon.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/dpsetphi.F90 > ../obj/dpsetphi.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dpsetphi.o ../obj/dpsetphi.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/nonpolar2.F90 > ../obj/nonpolar2.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/nonpolar2.o ../obj/nonpolar2.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/pbfock.F90 > ../obj/pbfock.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pbfock.o ../obj/pbfock.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/pb_mds.F90 > ../obj/pb_mds.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pb_mds.o ../obj/pb_mds.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/pb_putpnt.F90 > ../obj/pb_putpnt.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pb_putpnt.o ../obj/pb_putpnt.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/pbsolver.F90 > ../obj/pbsolver.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pbsolver.o ../obj/pbsolver.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/pb_spt.F90 > ../obj/pb_spt.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pb_spt.o ../obj/pb_spt.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/pb_subdiv.F90 > ../obj/pb_subdiv.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pb_subdiv.o ../obj/pb_subdiv.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/pb_vector.F90 > ../obj/pb_vector.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pb_vector.o ../obj/pb_vector.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pb/pbDriver.F90 > ../obj/pbDriver.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pbDriver.o ../obj/pbDriver.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_calcb.F90 > ../obj/pme_calcb.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_calcb.o ../obj/pme_calcb.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_calcq.F90 > ../obj/pme_calcq.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_calcq.o ../obj/pme_calcq.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_calcqmc.F90 > ../obj/pme_calcqmc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_calcqmc.o ../obj/pme_calcqmc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_calctheta.F90 > ../obj/pme_calctheta.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_calctheta.o ../obj/pme_calctheta.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_derec.F90 > ../obj/pme_derec.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_derec.o ../obj/pme_derec.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_derecmc.F90 > ../obj/pme_derecmc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_derecmc.o ../obj/pme_derecmc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_direct.F90 > ../obj/pme_direct.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_direct.o ../obj/pme_direct.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_directmc.F90 > ../obj/pme_directmc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_directmc.o ../obj/pme_directmc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_erec.F90 > ../obj/pme_erec.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_erec.o ../obj/pme_erec.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_erecmc.F90 > ../obj/pme_erecmc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_erecmc.o ../obj/pme_erecmc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_recip.F90 > ../obj/pme_recip.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_recip.o ../obj/pme_recip.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_recipmc.F90 > ../obj/pme_recipmc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_recipmc.o ../obj/pme_recipmc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pme_setup.F90 > ../obj/pme_setup.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pme_setup.o ../obj/pme_setup.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/pme/pmeDriver.F90 > ../obj/pmeDriver.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pmeDriver.o ../obj/pmeDriver.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/scf/fmix.F90 > ../obj/fmix.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/fmix.o ../obj/fmix.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/scf/escf.F90 > ../obj/escf.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/escf.o ../obj/escf.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/scf/initp.F90 > ../obj/initp.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/initp.o ../obj/initp.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/scf/pmix.F90 > ../obj/pmix.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pmix.o ../obj/pmix.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/setup/assign.F90 > ../obj/assign.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/assign.o ../obj/assign.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/setup/atmlist.F90 > ../obj/atmlist.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/atmlist.o ../obj/atmlist.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/setup/glbpnt.F90 > ../obj/glbpnt.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/glbpnt.o ../obj/glbpnt.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/setup/initializeVars.F90 > ../obj/initializeVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/initializeVars.o ../obj/initializeVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/setup/intpr.F90 > ../obj/intpr.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/intpr.o ../obj/intpr.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/setup/setdef.F90 > ../obj/setdef.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/setdef.o ../obj/setdef.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/setup/setname2.F90 > ../obj/setname2.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/setname2.o ../obj/setname2.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/setup/setopt.F90 > ../obj/setopt.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/setopt.o ../obj/setopt.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/setup/setup.F90 > ../obj/setup.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/setup.o ../obj/setup.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/setup/stripkeywd.F90 > ../obj/stripkeywd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/stripkeywd.o ../obj/stripkeywd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/atmchg.F90 > ../obj/atmchg.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/atmchg.o ../obj/atmchg.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/bcheck.F90 > ../obj/bcheck.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/bcheck.o ../obj/bcheck.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/dipole.F90 > ../obj/dipole.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dipole.o ../obj/dipole.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/homolumo.F90 > ../obj/homolumo.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/homolumo.o ../obj/homolumo.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/mkdos.F90 > ../obj/mkdos.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mkdos.o ../obj/mkdos.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/push.F90 > ../obj/push.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/push.o ../obj/push.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/pwdecomp.F90 > ../obj/pwdecomp.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pwdecomp.o ../obj/pwdecomp.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/rotate.F90 > ../obj/rotate.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rotate.o ../obj/rotate.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/thermo.F90 > ../obj/thermo.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/thermo.o ../obj/thermo.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/toolsRdKeys.F90 > ../obj/toolsRdKeys.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/toolsRdKeys.o ../obj/toolsRdKeys.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/toolsRdTail.F90 > ../obj/toolsRdTail.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/toolsRdTail.o ../obj/toolsRdTail.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/toolsDriver.F90 > ../obj/toolsDriver.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/toolsDriver.o ../obj/toolsDriver.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/tools/rderror.F90 > ../obj/rderror.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rderror.o ../obj/rderror.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/ts/geots.F90 > ../obj/geots.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/geots.o ../obj/geots.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/ts/prjfc.F90 > ../obj/prjfc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/prjfc.o ../obj/prjfc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/ts/septs.F90 > ../obj/septs.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/septs.o ../obj/septs.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/ts/tsqna.F90 > ../obj/tsqna.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/tsqna.o ../obj/tsqna.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/ts/tsrfo.F90 > ../obj/tsrfo.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/tsrfo.o ../obj/tsrfo.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/av.F90 > ../obj/av.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/av.o ../obj/av.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/binloc_index.F90 > ../obj/binloc_index.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/binloc_index.o ../obj/binloc_index.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/bleng.F90 > ../obj/bleng.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/bleng.o ../obj/bleng.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/bndang.F90 > ../obj/bndang.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/bndang.o ../obj/bndang.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/bpair.F90 > ../obj/bpair.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/bpair.o ../obj/bpair.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/bsort.F90 > ../obj/bsort.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/bsort.o ../obj/bsort.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/bspline.F90 > ../obj/bspline.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/bspline.o ../obj/bspline.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/calcgeo.F90 > ../obj/calcgeo.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/calcgeo.o ../obj/calcgeo.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/chkovlp.F90 > ../obj/chkovlp.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/chkovlp.o ../obj/chkovlp.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/diffp_stat.F90 > ../obj/diffp_stat.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/diffp_stat.o ../obj/diffp_stat.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/dihedr.F90 > ../obj/dihedr.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dihedr.o ../obj/dihedr.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/dograd.F90 > ../obj/dograd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dograd.o ../obj/dograd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/etimer.F90 > ../obj/etimer.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/etimer.o ../obj/etimer.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/g2int.F90 > ../obj/g2int.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/g2int.o ../obj/g2int.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/gcart.F90 > ../obj/gcart.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/gcart.o ../obj/gcart.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/getcrd.F90 > ../obj/getcrd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/getcrd.o ../obj/getcrd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/getpar2.F90 > ../obj/getpar2.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/getpar2.o ../obj/getpar2.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/getpar.F90 > ../obj/getpar.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/getpar.o ../obj/getpar.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/getxyz.F90 > ../obj/getxyz.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/getxyz.o ../obj/getxyz.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/icoord.F90 > ../obj/icoord.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/icoord.o ../obj/icoord.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/ijpair.F90 > ../obj/ijpair.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/ijpair.o ../obj/ijpair.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/mcweeny.F90 > ../obj/mcweeny.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mcweeny.o ../obj/mcweeny.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/mvcrd.F90 > ../obj/mvcrd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/mvcrd.o ../obj/mvcrd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/namemcf.F90 > ../obj/namemcf.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/namemcf.o ../obj/namemcf.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/int/oned.F90 > ../obj/oned.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/oned.o ../obj/oned.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/opnfil.F90 > ../obj/opnfil.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/opnfil.o ../obj/opnfil.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/out2stream.F90 > ../obj/out2stream.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/out2stream.o ../obj/out2stream.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/out2xml.F90 > ../obj/out2xml.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/out2xml.o ../obj/out2xml.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/pbcxyz.F90 > ../obj/pbcxyz.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/pbcxyz.o ../obj/pbcxyz.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/random.F90 > ../obj/random.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/random.o ../obj/random.f In file ../obj/random.f:9 double precision FUNCTION xrandom(idum) 1 Warning (139): Value of function 'xrandom' at (1) is never set In file ../obj/random.f:19 FUNCTION irandom(idum,imax) 1 Warning (139): Value of function 'irandom' at (1) is never set cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/rcalc.F90 > ../obj/rcalc.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rcalc.o ../obj/rcalc.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/setprtvec.F90 > ../obj/setprtvec.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/setprtvec.o ../obj/setprtvec.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/setunit.F90 > ../obj/setunit.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/setunit.o ../obj/setunit.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/strcatf.F90 > ../obj/strcatf.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/strcatf.o ../obj/strcatf.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/upcase.F90 > ../obj/upcase.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/upcase.o ../obj/upcase.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/updatefname.F90 > ../obj/updatefname.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/updatefname.o ../obj/updatefname.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/wdjoin.F90 > ../obj/wdjoin.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/wdjoin.o ../obj/wdjoin.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/whatis.F90 > ../obj/whatis.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/whatis.o ../obj/whatis.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/util/zmake.F90 > ../obj/zmake.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/zmake.o ../obj/zmake.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/qm_mm_div.F90 > ../obj/qm_mm_div.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/qm_mm_div.o ../obj/qm_mm_div.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/hcorecl.F90 > ../obj/hcorecl.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/hcorecl.o ../obj/hcorecl.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/tran.F90 > ../obj/tran.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/tran.o ../obj/tran.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/computeDimSizesqmmm.F90 > ../obj/computeDimSizesqmmm.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/computeDimSizesqmmm.o ../obj/computeDimSizesqmmm.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/transd.F90 > ../obj/transd.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/transd.o ../obj/transd.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/gcartcl.F90 > ../obj/gcartcl.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/gcartcl.o ../obj/gcartcl.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/dcartcl.F90 > ../obj/dcartcl.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/dcartcl.o ../obj/dcartcl.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/analytcl.F90 > ../obj/analytcl.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/analytcl.o ../obj/analytcl.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/rotatcl.F90 > ../obj/rotatcl.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rotatcl.o ../obj/rotatcl.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/delricl.F90 > ../obj/delricl.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/delricl.o ../obj/delricl.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/delmolcl.F90 > ../obj/delmolcl.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/delmolcl.o ../obj/delmolcl.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/rotatecl.F90 > ../obj/rotatecl.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/rotatecl.o ../obj/rotatecl.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/reppcl.F90 > ../obj/reppcl.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/reppcl.o ../obj/reppcl.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/initmem.F90 > ../obj/initmem.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/initmem.o ../obj/initmem.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/energyqmmm.F90 > ../obj/energyqmmm.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/energyqmmm.o ../obj/energyqmmm.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/scf/doscfqmmm.F90 > ../obj/doscfqmmm.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/doscfqmmm.o ../obj/doscfqmmm.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/scf/fockqmmm.F90 > ../obj/fockqmmm.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/fockqmmm.o ../obj/fockqmmm.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/setup/commandqmmm.F90 > ../obj/commandqmmm.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/commandqmmm.o ../obj/commandqmmm.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/qmmm/initmem2.F90 > ../obj/initmem2.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/initmem2.o ../obj/initmem2.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocateMxAtomVarsqmmm.F90 > ../obj/allocateMxAtomVarsqmmm.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocateMxAtomVarsqmmm.o ../obj/allocateMxAtomVarsqmmm.f ar rv libdivcon.a ../obj/chgRdKeys.o ../obj/ioRdKeys.o ../obj/ioRdTail.o ../obj/dcRdKeys.o ../obj/dcRdTail.o ../obj/mcRdKeys.o ../obj/minRdKeys.o ../obj/minRdTail.o ../obj/mmRdKeys.o ../obj/mmRdTail.o ../obj/nmrRdKeys.o ../obj/nmrRdTail.o ../obj/paramRdKeys.o ../obj/pbRdKeys.o ../obj/pmeRdKeys.o ../obj/scfRdKeys.o ../obj/tsRdKeys.o ../obj/atgrid.o ../obj/chkres.o ../obj/clustsub.o ../obj/cmbcore.o ../obj/cmbsub.o ../obj/doferm.o ../obj/esqr.o ../obj/esqrfdm.o ../obj/frmchk.o ../obj/fshift.o ../obj/gensub.o ../obj/gridafnc.o ../obj/gridrfnc.o ../obj/mixgrid.o ../obj/mkgrid.o ../obj/pgridafnc.o ../obj/pgridrfnc.o ../obj/resgrid.o ../obj/setncell.o ../obj/sproc.o ../obj/dc_module.o ../obj/freq.o ../obj/hsep.o ../obj/freqRdKeys.o ../obj/freqRdTail.o ../obj/freq_module.o ../obj/hamRdKeys.o ../obj/mndo_module.o ../obj/am1_module.o ../obj/pm3_module.o ../obj/mndod_module.o ../obj/pddgpm3_module.o ../obj/aijm.o ../obj/attrecurse.o ../obj/ddpo.o ../obj/diat.o ../obj/ecd.o ../obj/electricfield.o ../obj/erecursive.o ../obj/FmT.o ../obj/inighd.o ../obj/intdd1.o ../obj/intdd2.o ../obj/intdd3.o ../obj/intdd4.o ../obj/intdd5.o ../obj/intdd6.o ../obj/intdd.o ../obj/intdp.o ../obj/intds.o ../obj/intpd.o ../obj/intsd.o ../obj/localdd.o ../obj/localdp.o ../obj/localds.o ../obj/localpd.o ../obj/localsd.o ../obj/overlap.o ../obj/overlp.o ../obj/repuld.o ../obj/repul.o ../obj/sabt.o ../obj/setdorb.o ../obj/slow.o ../obj/slowi.o ../obj/intRdKeys.o ../obj/int_module.o ../obj/getversion.o ../obj/header.o ../obj/printen.o ../obj/printpar.o ../obj/printsub.o ../obj/rdcoord.o ../obj/rdbelly.o ../obj/rdbox.o ../obj/rdchemix.o ../obj/rdcluster.o ../obj/rdcomb.o ../obj/rddmx.o ../obj/rddos.o ../obj/rdgrid.o ../obj/rdgroup.o ../obj/rdguess.o ../obj/rdhess.o ../obj/rdint.o ../obj/rdkeys.o ../obj/rdlist.o ../obj/rdneighb.o ../obj/rdnext.o ../obj/rdnmr.o ../obj/rdnum.o ../obj/rdpdb.o ../obj/rdprtvec.o ../obj/rdrestraints.o ../obj/rdrst.o ../obj/rdsub.o ../obj/rdtail.o ../obj/rdvdw.o ../obj/rdword.o ../obj/rdxyz.o ../obj/wrtchg.o ../obj/wrtcoor.o ../obj/wrtdefaultkeys.o ../obj/wrtdiv.o ../obj/wrtdmx.o ../obj/wrtgrd.o ../obj/wrthss.o ../obj/wrtint.o ../obj/wrtpdb.o ../obj/wrtqma.o ../obj/wrtrep.o ../obj/wrtrst.o ../obj/wrttim.o ../obj/wrtvec.o ../obj/wrtvecsub.o ../obj/wrtxyz.o ../obj/block.o ../obj/denful.o ../obj/densub.o ../obj/densubfdm.o ../obj/divcon.o ../obj/edriver.o ../obj/global_module.o ../obj/param_module.o ../obj/math_module.o ../obj/pme_module.o ../obj/mm_module.o ../obj/nmr_module.o ../obj/mosub.o ../obj/mosubfdm.o ../obj/mosubfdmx.o ../obj/mainRdKeys.o ../obj/element_module.o ../obj/diag.o ../obj/diagp.o ../obj/fourier.o ../obj/lsolve.o ../obj/math.o ../obj/normalization.o ../obj/pdsyevd_driver.o ../obj/pdsyevx_driver.o ../obj/zheev.o ../obj/boxmove.o ../obj/boxstep.o ../obj/dovir.o ../obj/gcartmc.o ../obj/getrforc.o ../obj/mccopy.o ../obj/mcsetup.o ../obj/nptdriver.o ../obj/nvtdriver.o ../obj/resmove.o ../obj/resstep.o ../obj/rottr.o ../obj/setbox.o ../obj/submove.o ../obj/mc_module.o ../obj/allocatevars.o ../obj/deallocatevars.o ../obj/allocateDcVars.o ../obj/allocateIntVars.o ../obj/allocateMmVars.o ../obj/allocateFreqVars.o ../obj/allocateGuessVars.o ../obj/allocateMcVars.o ../obj/allocateMinVars.o ../obj/allocateNmrVars.o ../obj/allocateParamVars.o ../obj/allocatePmeVars.o ../obj/allocateScrfVars.o ../obj/allocateToolsVars.o ../obj/bsrch.o ../obj/diislb.o ../obj/diisub.o ../obj/geoopt.o ../obj/geoopt_module.o ../obj/getdir.o ../obj/lbfgs.o ../obj/linmin.o ../obj/min_module.o ../obj/getmm.o ../obj/getpep.o ../obj/ljglobals.o ../obj/ljint.o ../obj/mmroutines.o ../obj/restraint.o ../obj/mmDriver.o ../obj/balance.o ../obj/set_mpi_init.o ../obj/assignbasis.o ../obj/chshift.o ../obj/nmrdenful.o ../obj/nmrdensub.o ../obj/nmrdmx.o ../obj/nmresqr.o ../obj/oethccs.o ../obj/mndonmr_module.o ../obj/coppnt.o ../obj/error.o ../obj/loop.o ../obj/parop2.o ../obj/parop.o ../obj/recalc.o ../obj/tstpnt.o ../obj/chk_run_delphi.o ../obj/divpb.o ../obj/dpaccelerate.o ../obj/dpchargegrid.o ../obj/dpcollectsurfcharge.o ../obj/dpfinesurfprep.o ../obj/dpfinesurfacc.o ../obj/dpfinesurfrelax.o ../obj/dpgetmol.o ../obj/dpinit.o ../obj/dploop.o ../obj/dpmakegrid.o ../obj/dpmakesurface.o ../obj/dpmodule.o ../obj/dpsetepsilon.o ../obj/dpsetphi.o ../obj/nonpolar2.o ../obj/pbfock.o ../obj/pb_mds.o ../obj/pb_putpnt.o ../obj/pbsolver.o ../obj/pb_spt.o ../obj/pb_subdiv.o ../obj/pb_vector.o ../obj/pbDriver.o ../obj/pme_calcb.o ../obj/pme_calcq.o ../obj/pme_calcqmc.o ../obj/pme_calctheta.o ../obj/pme_derec.o ../obj/pme_derecmc.o ../obj/pme_direct.o ../obj/pme_directmc.o ../obj/pme_erec.o ../obj/pme_erecmc.o ../obj/pme_recip.o ../obj/pme_recipmc.o ../obj/pme_setup.o ../obj/pmeDriver.o ../obj/fmix.o ../obj/escf.o ../obj/initp.o ../obj/pmix.o ../obj/scf_module.o ../obj/assign.o ../obj/atmlist.o ../obj/glbpnt.o ../obj/initializeVars.o ../obj/intpr.o ../obj/setdef.o ../obj/setname2.o ../obj/setopt.o ../obj/setup.o ../obj/stripkeywd.o ../obj/atmchg.o ../obj/bcheck.o ../obj/dipole.o ../obj/homolumo.o ../obj/mkdos.o ../obj/push.o ../obj/pwdecomp.o ../obj/rotate.o ../obj/thermo.o ../obj/toolsRdKeys.o ../obj/toolsRdTail.o ../obj/tools_module.o ../obj/toolsDriver.o ../obj/rderror.o ../obj/error_module.o ../obj/geots.o ../obj/prjfc.o ../obj/septs.o ../obj/tsqna.o ../obj/tsrfo.o ../obj/ts_module.o ../obj/av.o ../obj/binloc_index.o ../obj/bleng.o ../obj/bndang.o ../obj/bpair.o ../obj/bsort.o ../obj/bspline.o ../obj/calcgeo.o ../obj/chkovlp.o ../obj/diffp_stat.o ../obj/dihedr.o ../obj/dograd.o ../obj/etimer.o ../obj/g2int.o ../obj/gcart.o ../obj/getcrd.o ../obj/getpar2.o ../obj/getpar.o ../obj/getxyz.o ../obj/icoord.o ../obj/ijpair.o ../obj/mcweeny.o ../obj/mvcrd.o ../obj/namemcf.o ../obj/oned.o ../obj/opnfil.o ../obj/out2stream.o ../obj/out2xml.o ../obj/pbcxyz.o ../obj/random.o ../obj/rcalc.o ../obj/save_module.o ../obj/setprtvec.o ../obj/setunit.o ../obj/strcatf.o ../obj/upcase.o ../obj/updatefname.o ../obj/wdjoin.o ../obj/whatis.o ../obj/zmake.o ../obj/qm_mm_div.o ../obj/hcorecl.o ../obj/tran.o ../obj/computeDimSizesqmmm.o ../obj/transd.o ../obj/gcartcl.o ../obj/dcartcl.o ../obj/analytcl.o ../obj/rotatcl.o ../obj/delricl.o ../obj/delmolcl.o ../obj/rotatecl.o ../obj/reppcl.o ../obj/initmem.o ../obj/energyqmmm.o ../obj/doscfqmmm.o ../obj/fockqmmm.o ../obj/commandqmmm.o ../obj/initmem2.o ../obj/allocateMxAtomVarsqmmm.o ar: creating libdivcon.a a - ../obj/chgRdKeys.o a - ../obj/ioRdKeys.o a - ../obj/ioRdTail.o a - ../obj/dcRdKeys.o a - ../obj/dcRdTail.o a - ../obj/mcRdKeys.o a - ../obj/minRdKeys.o a - ../obj/minRdTail.o a - ../obj/mmRdKeys.o a - ../obj/mmRdTail.o a - ../obj/nmrRdKeys.o a - ../obj/nmrRdTail.o a - ../obj/paramRdKeys.o a - ../obj/pbRdKeys.o a - ../obj/pmeRdKeys.o a - ../obj/scfRdKeys.o a - ../obj/tsRdKeys.o a - ../obj/atgrid.o a - ../obj/chkres.o a - ../obj/clustsub.o a - ../obj/cmbcore.o a - ../obj/cmbsub.o a - ../obj/doferm.o a - ../obj/esqr.o a - ../obj/esqrfdm.o a - ../obj/frmchk.o a - ../obj/fshift.o a - ../obj/gensub.o a - ../obj/gridafnc.o a - ../obj/gridrfnc.o a - ../obj/mixgrid.o a - ../obj/mkgrid.o a - ../obj/pgridafnc.o a - ../obj/pgridrfnc.o a - ../obj/resgrid.o a - ../obj/setncell.o a - ../obj/sproc.o a - ../obj/dc_module.o a - ../obj/freq.o a - ../obj/hsep.o a - ../obj/freqRdKeys.o a - ../obj/freqRdTail.o a - ../obj/freq_module.o a - ../obj/hamRdKeys.o a - ../obj/mndo_module.o a - ../obj/am1_module.o a - ../obj/pm3_module.o a - ../obj/mndod_module.o a - ../obj/pddgpm3_module.o a - ../obj/aijm.o a - ../obj/attrecurse.o a - ../obj/ddpo.o a - ../obj/diat.o a - ../obj/ecd.o a - ../obj/electricfield.o a - ../obj/erecursive.o a - ../obj/FmT.o a - ../obj/inighd.o a - ../obj/intdd1.o a - ../obj/intdd2.o a - ../obj/intdd3.o a - ../obj/intdd4.o a - ../obj/intdd5.o a - ../obj/intdd6.o a - ../obj/intdd.o a - ../obj/intdp.o a - ../obj/intds.o a - ../obj/intpd.o a - ../obj/intsd.o a - ../obj/localdd.o a - ../obj/localdp.o a - ../obj/localds.o a - ../obj/localpd.o a - ../obj/localsd.o a - ../obj/overlap.o a - ../obj/overlp.o a - ../obj/repuld.o a - ../obj/repul.o a - ../obj/sabt.o a - ../obj/setdorb.o a - ../obj/slow.o a - ../obj/slowi.o a - ../obj/intRdKeys.o a - ../obj/int_module.o a - ../obj/getversion.o a - ../obj/header.o a - ../obj/printen.o a - ../obj/printpar.o a - ../obj/printsub.o a - ../obj/rdcoord.o a - ../obj/rdbelly.o a - ../obj/rdbox.o a - ../obj/rdchemix.o a - ../obj/rdcluster.o a - ../obj/rdcomb.o a - ../obj/rddmx.o a - ../obj/rddos.o a - ../obj/rdgrid.o a - ../obj/rdgroup.o a - ../obj/rdguess.o a - ../obj/rdhess.o a - ../obj/rdint.o a - ../obj/rdkeys.o a - ../obj/rdlist.o a - ../obj/rdneighb.o a - ../obj/rdnext.o a - ../obj/rdnmr.o a - ../obj/rdnum.o a - ../obj/rdpdb.o a - ../obj/rdprtvec.o a - ../obj/rdrestraints.o a - ../obj/rdrst.o a - ../obj/rdsub.o a - ../obj/rdtail.o a - ../obj/rdvdw.o a - ../obj/rdword.o a - ../obj/rdxyz.o a - ../obj/wrtchg.o a - ../obj/wrtcoor.o a - ../obj/wrtdefaultkeys.o a - ../obj/wrtdiv.o a - ../obj/wrtdmx.o a - ../obj/wrtgrd.o a - ../obj/wrthss.o a - ../obj/wrtint.o a - ../obj/wrtpdb.o a - ../obj/wrtqma.o a - ../obj/wrtrep.o a - ../obj/wrtrst.o a - ../obj/wrttim.o a - ../obj/wrtvec.o a - ../obj/wrtvecsub.o a - ../obj/wrtxyz.o a - ../obj/block.o a - ../obj/denful.o a - ../obj/densub.o a - ../obj/densubfdm.o a - ../obj/divcon.o a - ../obj/edriver.o a - ../obj/global_module.o a - ../obj/param_module.o a - ../obj/math_module.o a - ../obj/pme_module.o a - ../obj/mm_module.o a - ../obj/nmr_module.o a - ../obj/mosub.o a - ../obj/mosubfdm.o a - ../obj/mosubfdmx.o a - ../obj/mainRdKeys.o a - ../obj/element_module.o a - ../obj/diag.o a - ../obj/diagp.o a - ../obj/fourier.o a - ../obj/lsolve.o a - ../obj/math.o a - ../obj/normalization.o a - ../obj/pdsyevd_driver.o a - ../obj/pdsyevx_driver.o a - ../obj/zheev.o a - ../obj/boxmove.o a - ../obj/boxstep.o a - ../obj/dovir.o a - ../obj/gcartmc.o a - ../obj/getrforc.o a - ../obj/mccopy.o a - ../obj/mcsetup.o a - ../obj/nptdriver.o a - ../obj/nvtdriver.o a - ../obj/resmove.o a - ../obj/resstep.o a - ../obj/rottr.o a - ../obj/setbox.o a - ../obj/submove.o a - ../obj/mc_module.o a - ../obj/allocatevars.o a - ../obj/deallocatevars.o a - ../obj/allocateDcVars.o a - ../obj/allocateIntVars.o a - ../obj/allocateMmVars.o a - ../obj/allocateFreqVars.o a - ../obj/allocateGuessVars.o a - ../obj/allocateMcVars.o a - ../obj/allocateMinVars.o a - ../obj/allocateNmrVars.o a - ../obj/allocateParamVars.o a - ../obj/allocatePmeVars.o a - ../obj/allocateScrfVars.o a - ../obj/allocateToolsVars.o a - ../obj/bsrch.o a - ../obj/diislb.o a - ../obj/diisub.o a - ../obj/geoopt.o a - ../obj/geoopt_module.o a - ../obj/getdir.o a - ../obj/lbfgs.o a - ../obj/linmin.o a - ../obj/min_module.o a - ../obj/getmm.o a - ../obj/getpep.o a - ../obj/ljglobals.o a - ../obj/ljint.o a - ../obj/mmroutines.o a - ../obj/restraint.o a - ../obj/mmDriver.o a - ../obj/balance.o a - ../obj/set_mpi_init.o a - ../obj/assignbasis.o a - ../obj/chshift.o a - ../obj/nmrdenful.o a - ../obj/nmrdensub.o a - ../obj/nmrdmx.o a - ../obj/nmresqr.o a - ../obj/oethccs.o a - ../obj/mndonmr_module.o a - ../obj/coppnt.o a - ../obj/error.o a - ../obj/loop.o a - ../obj/parop2.o a - ../obj/parop.o a - ../obj/recalc.o a - ../obj/tstpnt.o a - ../obj/chk_run_delphi.o a - ../obj/divpb.o a - ../obj/dpaccelerate.o a - ../obj/dpchargegrid.o a - ../obj/dpcollectsurfcharge.o a - ../obj/dpfinesurfprep.o a - ../obj/dpfinesurfacc.o a - ../obj/dpfinesurfrelax.o a - ../obj/dpgetmol.o a - ../obj/dpinit.o a - ../obj/dploop.o a - ../obj/dpmakegrid.o a - ../obj/dpmakesurface.o a - ../obj/dpmodule.o a - ../obj/dpsetepsilon.o a - ../obj/dpsetphi.o a - ../obj/nonpolar2.o a - ../obj/pbfock.o a - ../obj/pb_mds.o a - ../obj/pb_putpnt.o a - ../obj/pbsolver.o a - ../obj/pb_spt.o a - ../obj/pb_subdiv.o a - ../obj/pb_vector.o a - ../obj/pbDriver.o a - ../obj/pme_calcb.o a - ../obj/pme_calcq.o a - ../obj/pme_calcqmc.o a - ../obj/pme_calctheta.o a - ../obj/pme_derec.o a - ../obj/pme_derecmc.o a - ../obj/pme_direct.o a - ../obj/pme_directmc.o a - ../obj/pme_erec.o a - ../obj/pme_erecmc.o a - ../obj/pme_recip.o a - ../obj/pme_recipmc.o a - ../obj/pme_setup.o a - ../obj/pmeDriver.o a - ../obj/fmix.o a - ../obj/escf.o a - ../obj/initp.o a - ../obj/pmix.o a - ../obj/scf_module.o a - ../obj/assign.o a - ../obj/atmlist.o a - ../obj/glbpnt.o a - ../obj/initializeVars.o a - ../obj/intpr.o a - ../obj/setdef.o a - ../obj/setname2.o a - ../obj/setopt.o a - ../obj/setup.o a - ../obj/stripkeywd.o a - ../obj/atmchg.o a - ../obj/bcheck.o a - ../obj/dipole.o a - ../obj/homolumo.o a - ../obj/mkdos.o a - ../obj/push.o a - ../obj/pwdecomp.o a - ../obj/rotate.o a - ../obj/thermo.o a - ../obj/toolsRdKeys.o a - ../obj/toolsRdTail.o a - ../obj/tools_module.o a - ../obj/toolsDriver.o a - ../obj/rderror.o a - ../obj/error_module.o a - ../obj/geots.o a - ../obj/prjfc.o a - ../obj/septs.o a - ../obj/tsqna.o a - ../obj/tsrfo.o a - ../obj/ts_module.o a - ../obj/av.o a - ../obj/binloc_index.o a - ../obj/bleng.o a - ../obj/bndang.o a - ../obj/bpair.o a - ../obj/bsort.o a - ../obj/bspline.o a - ../obj/calcgeo.o a - ../obj/chkovlp.o a - ../obj/diffp_stat.o a - ../obj/dihedr.o a - ../obj/dograd.o a - ../obj/etimer.o a - ../obj/g2int.o a - ../obj/gcart.o a - ../obj/getcrd.o a - ../obj/getpar2.o a - ../obj/getpar.o a - ../obj/getxyz.o a - ../obj/icoord.o a - ../obj/ijpair.o a - ../obj/mcweeny.o a - ../obj/mvcrd.o a - ../obj/namemcf.o a - ../obj/oned.o a - ../obj/opnfil.o a - ../obj/out2stream.o a - ../obj/out2xml.o a - ../obj/pbcxyz.o a - ../obj/random.o a - ../obj/rcalc.o a - ../obj/save_module.o a - ../obj/setprtvec.o a - ../obj/setunit.o a - ../obj/strcatf.o a - ../obj/upcase.o a - ../obj/updatefname.o a - ../obj/wdjoin.o a - ../obj/whatis.o a - ../obj/zmake.o a - ../obj/qm_mm_div.o a - ../obj/hcorecl.o a - ../obj/tran.o a - ../obj/computeDimSizesqmmm.o a - ../obj/transd.o a - ../obj/gcartcl.o a - ../obj/dcartcl.o a - ../obj/analytcl.o a - ../obj/rotatcl.o a - ../obj/delricl.o a - ../obj/delmolcl.o a - ../obj/rotatecl.o a - ../obj/reppcl.o a - ../obj/initmem.o a - ../obj/energyqmmm.o a - ../obj/doscfqmmm.o a - ../obj/fockqmmm.o a - ../obj/commandqmmm.o a - ../obj/initmem2.o a - ../obj/allocateMxAtomVarsqmmm.o ranlib libdivcon.a mv libdivcon.a ../src/qmmm/ make[3]: Leaving directory `/usr/local/amber9/src/dcqtp/mod' make[2]: Leaving directory `/usr/local/amber9/src/dcqtp' g95 -ffree-form -o sander.exe evb_vars.o evb_input.o evb_init.o evb_alloc.o evb_dealloc.o check_input.o evb_io.o evb_keywrd.o exchange_CM.o evb_mcp.o evb_force.o diabatic.o evb_2stdebug.o egap_umb_2stdebug.o exchange_gauss.o exchange_warshel.o morsify.o morse_anal2num.o evb_matrix.o evb_ntrfc.o out_evb.o constants.o stack.o qmmm_module.o trace.o lmod.o decomp.o icosasurf.o egb.o findmask.o pb_force.o pb_exmol.o pb_mpfrc.o pb_direct.o pb_list.o np_force.o sa_driver.o relax_mat.o nmr.o multisander.o sander.o trajene.o cshf.o nmrcal.o pearsn.o printe.o runmin.o rdparm.o mdread.o locmem.o runmd.o getcor.o degcnt.o decnvh.o fastwt.o parallel.o shake.o ene.o mdwrit.o minrit.o set.o dynlib.o mdfil.o nmlsrc.o ew_force.o ew_setup.o ew_box.o ew_bspline.o ew_fft.o nonbond_list.o short_ene.o ew_recip.o pcshift.o align.o rfree.o rgroup.o random.o amopen.o debug.o ew_recip_reg.o ew_handle_dips.o ew_dipole_recip.o mexit.o new_time.o extra_pts.o thermo_int.o matinv.o assert.o mmtsb.o mmtsb_client.o erfcfun.o veclib.o is_init.o constantph.o prn_dipoles.o ips.o sglds.o amoeba_valence.o amoeba_multipoles.o amoeba_recip.o amoeba_interface.o amoeba_direct.o amoeba_mdin.o amoeba_adjust.o amoeba_self.o amoeba_vdw.o amoeba_induced.o amoeba_runmd.o bintraj.o spatial_recip.o spatial_fft.o parms.o qm_mm.o qm_link_atoms.o qm_nb_list.o qm_extract_coords.o qm_ewald.o qm_gb.o qm_zero_charges.o qm_print_info.o qm_assign_atom_types.o qm2_allocate_e_repul.o qm2_calc_charges.o qm2_calc_rij_and_eqns.o qm2_dihed.o qm2_energy.o qm2_fock.o qm2_get_qm_forces.o qm2_get_qmmm_forces.o qm2_h1elec.o qm2_hcore_qmqm.o qm2_hcore_qmmm.o qm2_identify_peptide_links.o qm2_load_params_and_allocate.o qm2_repp.o qm2_rotate_qmqm.o qm2_scf.o qm2_setup_orb_exp.o qm2_smallest_number.o qm2_dftb_module.o qm2_dftb_broyden.o qm2_dftb_dispersion_egr.o qm2_dftb_dispersion_params.o qm2_dftb_dispersionread.o qm2_dftb_eglcao.o qm2_dftb_energy.o qm2_dftb_ewevge.o qm2_dftb_externalchgrad.o qm2_dftb_externalshift.o qm2_dftb_fermi.o qm2_dftb_forces.o qm2_dftb_gamma.o qm2_dftb_gammamat.o qm2_dftb_get_qmmm_forces.o qm2_dftb_gettab.o qm2_dftb_load_params.o qm2_dftb_long_range.o qm2_dftb_main.o qm2_dftb_my_gradient.o qm2_dftb_my_mulliken.o qm2_dftb_repulsiv.o qm2_dftb_self.o qm2_dftb_shift.o qm2_dftb_short_range.o qm2_dftb_skpar.o qm2_dftb_slkode.o qm2_dftb_slktrafo.o \ qm_div.o force.o \ ../lmod/lmod.a ../dcqtp/src/qmmm/libdivcon.a \ ../lapack/lapack.a ../blas/blas.a \ ../lib/nxtsec.o ../lib/sys.a cpp -traditional -P -xassembler-with-cpp -DLES egb.f > _egb.f g95 -c -O3 -fno-second-underscore -ffree-form -o egb.LES.o _egb.f cpp -traditional -P -xassembler-with-cpp -DLES nmr.f > _nmr.f g95 -c -O3 -fno-second-underscore -ffree-form -o nmr.LES.o _nmr.f cpp -traditional -P -xassembler-with-cpp -DLES ew_recip.f > _ew_recip.f g95 -c -O3 -fno-second-underscore -ffree-form -o ew_recip.LES.o _ew_recip.f cpp -traditional -P -xassembler-with-cpp -DLES sander.f > _sander.f g95 -c -O0 -fno-second-underscore -ffree-form -o sander.LES.o _sander.f cpp -traditional -P -xassembler-with-cpp -DLES force.f > _force.f g95 -c -O3 -fno-second-underscore -ffree-form -o force.LES.o _force.f cpp -traditional -P -xassembler-with-cpp -DLES rdparm.f > _rdparm.f g95 -c -O0 -fno-second-underscore -ffree-form -o rdparm.LES.o _rdparm.f cpp -traditional -P -xassembler-with-cpp -DLES mdread.f > _mdread.f g95 -c -O0 -fno-second-underscore -ffree-form -o mdread.LES.o _mdread.f In file _mdread.f:2726 call cnstphread(ix(icpstinf),ix(icpresst),ix(icpptcnt), & 1 In file _mdread.f:1135 subroutine cnstphread(stateinf,resstate,protcnt,trescnt,& 2 Warning (155): Inconsistent types (INTEGER(4)/TYPE(const_ph_info)) in actual argument lists at (1) and (2) cpp -traditional -P -xassembler-with-cpp -DLES locmem.f > _locmem.f g95 -c -O0 -fno-second-underscore -ffree-form -o locmem.LES.o _locmem.f cpp -traditional -P -xassembler-with-cpp -DLES runmd.f > _runmd.f g95 -c -O3 -fno-second-underscore -ffree-form -o runmd.LES.o _runmd.f cpp -traditional -P -xassembler-with-cpp -DLES degcnt.f > _degcnt.f g95 -c -O3 -fno-second-underscore -ffree-form -o degcnt.LES.o _degcnt.f cpp -traditional -P -xassembler-with-cpp -DLES parallel.f > _parallel.f g95 -c -O0 -fno-second-underscore -ffree-form -o parallel.LES.o _parallel.f cpp -traditional -P -xassembler-with-cpp -DLES ene.f > _ene.f g95 -c -O3 -fno-second-underscore -ffree-form -o ene.LES.o _ene.f cpp -traditional -P -xassembler-with-cpp -DLES dynlib.f > _dynlib.f g95 -c -O3 -fno-second-underscore -ffree-form -o dynlib.LES.o _dynlib.f cpp -traditional -P -xassembler-with-cpp -DLES ew_force.f > _ew_force.f g95 -c -O3 -fno-second-underscore -ffree-form -o ew_force.LES.o _ew_force.f cpp -traditional -P -xassembler-with-cpp -DLES short_ene.f > _short_ene.f g95 -c -O3 -fno-second-underscore -ffree-form -o short_ene.LES.o _short_ene.f cpp -traditional -P -xassembler-with-cpp -DLES extra_pts.f > _extra_pts.f g95 -c -O3 -fno-second-underscore -ffree-form -o extra_pts.LES.o _extra_pts.f cpp -traditional -P -xassembler-with-cpp -DPIMD pimd_vars.f > _pimd_vars.f g95 -c -O0 -fno-second-underscore -ffree-form -o pimd_vars.PIMD.o _pimd_vars.f g95 -ffree-form -o sander.LES.exe evb_vars.o evb_input.o evb_init.o evb_alloc.o evb_dealloc.o check_input.o evb_io.o evb_keywrd.o exchange_CM.o evb_mcp.o evb_force.o diabatic.o evb_2stdebug.o egap_umb_2stdebug.o exchange_gauss.o exchange_warshel.o morsify.o morse_anal2num.o evb_matrix.o evb_ntrfc.o out_evb.o constants.o qmmm_module.o trace.o lmod.o decomp.o icosasurf.o egb.LES.o findmask.o pb_force.o pb_exmol.o pb_mpfrc.o pb_direct.o pb_list.o np_force.o sa_driver.o relax_mat.o nmr.LES.o multisander.o sander.LES.o trajene.o cshf.o nmrcal.o pearsn.o printe.o runmin.o nonbond_list.o force.LES.o rdparm.LES.o mdread.LES.o locmem.LES.o runmd.LES.o getcor.o degcnt.LES.o decnvh.o fastwt.o parallel.LES.o shake.o ene.LES.o mdwrit.o minrit.o set.o dynlib.LES.o mdfil.o nmlsrc.o ew_force.LES.o ew_setup.o ew_box.o ew_bspline.o ew_fft.o short_ene.LES.o ew_recip.LES.o pcshift.o align.o stack.o rfree.o rgroup.o random.o amopen.o debug.o ew_recip_reg.o ew_handle_dips.o ew_dipole_recip.o mexit.o new_time.o extra_pts.LES.o thermo_int.o matinv.o assert.o mmtsb.o mmtsb_client.o erfcfun.o veclib.o is_init.o constantph.o prn_dipoles.o ips.o sglds.o qm_mm.o qm_link_atoms.o qm_nb_list.o qm_extract_coords.o qm_ewald.o qm_gb.o qm_zero_charges.o qm_print_info.o qm_assign_atom_types.o qm2_allocate_e_repul.o qm2_calc_charges.o qm2_calc_rij_and_eqns.o qm2_dihed.o qm2_energy.o qm2_fock.o qm2_get_qm_forces.o qm2_get_qmmm_forces.o qm2_h1elec.o qm2_hcore_qmqm.o qm2_hcore_qmmm.o qm2_identify_peptide_links.o qm2_load_params_and_allocate.o qm2_repp.o qm2_rotate_qmqm.o qm2_scf.o qm2_setup_orb_exp.o qm2_smallest_number.o qm2_dftb_module.o qm2_dftb_broyden.o qm2_dftb_dispersion_egr.o qm2_dftb_dispersion_params.o qm2_dftb_dispersionread.o qm2_dftb_eglcao.o qm2_dftb_energy.o qm2_dftb_ewevge.o qm2_dftb_externalchgrad.o qm2_dftb_externalshift.o qm2_dftb_fermi.o qm2_dftb_forces.o qm2_dftb_gamma.o qm2_dftb_gammamat.o qm2_dftb_get_qmmm_forces.o qm2_dftb_gettab.o qm2_dftb_load_params.o qm2_dftb_long_range.o qm2_dftb_main.o qm2_dftb_my_gradient.o qm2_dftb_my_mulliken.o qm2_dftb_repulsiv.o qm2_dftb_self.o qm2_dftb_shift.o qm2_dftb_short_range.o qm2_dftb_skpar.o qm2_dftb_slkode.o qm2_dftb_slktrafo.o amoeba_valence.o amoeba_multipoles.o amoeba_recip.o amoeba_interface.o amoeba_direct.o amoeba_mdin.o amoeba_adjust.o amoeba_self.o amoeba_vdw.o amoeba_induced.o amoeba_runmd.o bintraj.o spatial_recip.o spatial_fft.o pimd_vars.PIMD.o parms.o \ ../lmod/lmod.a ../lapack/lapack.a ../blas/blas.a \ ../lib/nxtsec.o ../lib/sys.a cpp -traditional -P -xassembler-with-cpp ambmask.f > _ambmask.f g95 -c -O0 -fno-second-underscore -ffree-form -o ambmask.o _ambmask.f In file _ambmask.f:212 call gengroupinput(natom,nres,igraph,isymbl,ipres,lbres,6,mask) 1 In file _ambmask.f:591 subroutine gengroupinput(natom,nres,igraph,isymbl,ipres,lbres,nf,mask) 2 Warning (155): Inconsistent types (CHARACTER(1)/INTEGER(4)) in actual argument lists at (1) and (2) In file _ambmask.f:207 call genatlist(natom,nres,igraph,isymbl,ipres,lbres,6,mask) 1 In file _ambmask.f:424 subroutine genatlist(natom,nres,igraph,isymbl,ipres,lbres,nf,mask) 2 Warning (155): Inconsistent types (CHARACTER(1)/INTEGER(4)) in actual argument lists at (1) and (2) In file _ambmask.f:210 call genpdb(natom,nres,igraph,isymbl,ipres,lbres,6,crd,title,chg,mask) 1 In file _ambmask.f:559 subroutine genpdb(natom,nres,igraph,isymbl,ipres,lbres,nf,crd,title,chg,mask) 2 Warning (155): Inconsistent types (CHARACTER(1)/INTEGER(4)) in actual argument lists at (1) and (2) In file _ambmask.f:186 call getnam(natom,nres,igraph,isymbl,ipres,lbres,ititl,10,chg) 1 In file _ambmask.f:268 subroutine getnam(natom,nres,igraph,isymbl,ipres,lbres,ititl,nf,chg) 2 Warning (155): Inconsistent types (CHARACTER(1)/INTEGER(4)) in actual argument lists at (1) and (2) cd ../lib; make mexit.o make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `mexit.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' g95 -ffree-form -o ambmask.exe ambmask.o findmask.o \ amopen.o ../lib/mexit.o ../lib/nxtsec.o cpp -traditional -P -xassembler-with-cpp -DPIMD qmmm_module.f > _qmmm_module.f g95 -c -O3 -fno-second-underscore -ffree-form -o qmmm_module.PIMD.o _qmmm_module.f cpp -traditional -P -xassembler-with-cpp -DPIMD qm_link_atoms.f > _qm_link_atoms.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm_link_atoms.PIMD.o _qm_link_atoms.f cpp -traditional -P -xassembler-with-cpp -DPIMD qm_nb_list.f > _qm_nb_list.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm_nb_list.PIMD.o _qm_nb_list.f cpp -traditional -P -xassembler-with-cpp -DPIMD qm_mm.f > _qm_mm.f g95 -c -O3 -fno-second-underscore -ffree-form -o qm_mm.PIMD.o _qm_mm.f cpp -traditional -P -xassembler-with-cpp -DPIMD pimd_init.f > _pimd_init.f g95 -c -O0 -fno-second-underscore -ffree-form -o pimd_init.PIMD.o _pimd_init.f cpp -traditional -P -xassembler-with-cpp -DPIMD pimd_force.f > _pimd_force.f g95 -c -O0 -fno-second-underscore -ffree-form -o pimd_force.PIMD.o _pimd_force.f cpp -traditional -P -xassembler-with-cpp -DPIMD dynlib.f > _dynlib.f g95 -c -O3 -fno-second-underscore -ffree-form -o dynlib.PIMD.o _dynlib.f cpp -traditional -P -xassembler-with-cpp -DPIMD nonbond_list.f > _nonbond_list.f g95 -c -O3 -fno-second-underscore -ffree-form -o nonbond_list.PIMD.o _nonbond_list.f cpp -traditional -P -xassembler-with-cpp -DPIMD ew_force.f > _ew_force.f g95 -c -O3 -fno-second-underscore -ffree-form -o ew_force.PIMD.o _ew_force.f cpp -traditional -P -xassembler-with-cpp -DPIMD egb.f > _egb.f g95 -c -O3 -fno-second-underscore -ffree-form -o egb.PIMD.o _egb.f cpp -traditional -P -xassembler-with-cpp -DPIMD evb_ntrfc.f > _evb_ntrfc.f g95 -c -O0 -fno-second-underscore -ffree-form -o evb_ntrfc.PIMD.o _evb_ntrfc.f cpp -traditional -P -xassembler-with-cpp -DPIMD evb_pimd_init.f > _evb_pimd_init.f g95 -c -O0 -fno-second-underscore -ffree-form -o evb_pimd_init.PIMD.o _evb_pimd_init.f cpp -traditional -P -xassembler-with-cpp -DPIMD force.f > _force.f g95 -c -O3 -fno-second-underscore -ffree-form -o force.PIMD.o _force.f cpp -traditional -P -xassembler-with-cpp -DPIMD mdread.f > _mdread.f g95 -c -O0 -fno-second-underscore -ffree-form -o mdread.PIMD.o _mdread.f In file _mdread.f:2726 call cnstphread(ix(icpstinf),ix(icpresst),ix(icpptcnt), & 1 In file _mdread.f:1135 subroutine cnstphread(stateinf,resstate,protcnt,trescnt,& 2 Warning (155): Inconsistent types (INTEGER(4)/TYPE(const_ph_info)) in actual argument lists at (1) and (2) cpp -traditional -P -xassembler-with-cpp -DPIMD rdparm.f > _rdparm.f g95 -c -O0 -fno-second-underscore -ffree-form -o rdparm.PIMD.o _rdparm.f cpp -traditional -P -xassembler-with-cpp -DPIMD runmd.f > _runmd.f g95 -c -O3 -fno-second-underscore -ffree-form -o runmd.PIMD.o _runmd.f cpp -traditional -P -xassembler-with-cpp -DPIMD sander.f > _sander.f g95 -c -O0 -fno-second-underscore -ffree-form -o sander.PIMD.o _sander.f cpp -traditional -P -xassembler-with-cpp -DPIMD short_ene.f > _short_ene.f g95 -c -O3 -fno-second-underscore -ffree-form -o short_ene.PIMD.o _short_ene.f cpp -traditional -P -xassembler-with-cpp -DPIMD ew_setup.f > _ew_setup.f g95 -c -O3 -fno-second-underscore -ffree-form -o ew_setup.PIMD.o _ew_setup.f cpp -traditional -P -xassembler-with-cpp -DPIMD parallel.f > _parallel.f g95 -c -O0 -fno-second-underscore -ffree-form -o parallel.PIMD.o _parallel.f cpp -traditional -P -xassembler-with-cpp -DPIMD ene.f > _ene.f g95 -c -O3 -fno-second-underscore -ffree-form -o ene.PIMD.o _ene.f cpp -traditional -P -xassembler-with-cpp -DPIMD evb_matrix.f > _evb_matrix.f g95 -c -O3 -fno-second-underscore -ffree-form -o evb_matrix.PIMD.o _evb_matrix.f cpp -traditional -P -xassembler-with-cpp -DPIMD out_evb.f > _out_evb.f g95 -c -O3 -fno-second-underscore -ffree-form -o out_evb.PIMD.o _out_evb.f g95 -ffree-form -o sander.PIMD.exe parms.o constants.o qmmm_module.PIMD.o qm_link_atoms.PIMD.o qm_nb_list.PIMD.o qm_mm.PIMD.o pimd_vars.PIMD.o pimd_init.PIMD.o pimd_force.PIMD.o dynlib.PIMD.o ew_force.PIMD.o force.PIMD.o mdread.PIMD.o nonbond_list.PIMD.o rdparm.PIMD.o runmd.PIMD.o sander.PIMD.o short_ene.PIMD.o ew_setup.PIMD.o trace.o lmod.o decomp.o icosasurf.o egb.PIMD.o findmask.o pb_force.o pb_exmol.o pb_mpfrc.o pb_direct.o pb_list.o np_force.o sa_driver.o relax_mat.o nmr.LES.o multisander.o trajene.o cshf.o nmrcal.o pearsn.o printe.o runmin.o locmem.LES.o getcor.o degcnt.LES.o decnvh.o fastwt.o parallel.PIMD.o shake.o ene.PIMD.o mdwrit.o minrit.o set.o mdfil.o nmlsrc.o ew_box.o ew_bspline.o ew_fft.o ew_recip.LES.o pcshift.o align.o stack.o rfree.o rgroup.o random.o amopen.o debug.o ew_recip_reg.o ew_handle_dips.o ew_dipole_recip.o mexit.o new_time.o extra_pts.LES.o thermo_int.o matinv.o assert.o mmtsb.o mmtsb_client.o erfcfun.o veclib.o constantph.o prn_dipoles.o ips.o sglds.o qm_zero_charges.o qm_print_info.o qm_assign_atom_types.o qm_gb.o qm_ewald.o qm_extract_coords.o qm2_allocate_e_repul.o qm2_calc_charges.o qm2_calc_rij_and_eqns.o qm2_dihed.o qm2_energy.o qm2_fock.o qm2_get_qm_forces.o qm2_get_qmmm_forces.o qm2_h1elec.o qm2_hcore_qmqm.o qm2_hcore_qmmm.o qm2_identify_peptide_links.o qm2_load_params_and_allocate.o qm2_repp.o qm2_rotate_qmqm.o qm2_scf.o qm2_setup_orb_exp.o qm2_smallest_number.o qm2_dftb_module.o qm2_dftb_broyden.o qm2_dftb_dispersion_egr.o qm2_dftb_dispersion_params.o qm2_dftb_dispersionread.o qm2_dftb_eglcao.o qm2_dftb_energy.o qm2_dftb_ewevge.o qm2_dftb_externalchgrad.o qm2_dftb_externalshift.o qm2_dftb_fermi.o qm2_dftb_forces.o qm2_dftb_gamma.o qm2_dftb_gammamat.o qm2_dftb_get_qmmm_forces.o qm2_dftb_gettab.o qm2_dftb_load_params.o qm2_dftb_long_range.o qm2_dftb_main.o qm2_dftb_my_gradient.o qm2_dftb_my_mulliken.o qm2_dftb_repulsiv.o qm2_dftb_self.o qm2_dftb_shift.o qm2_dftb_short_range.o qm2_dftb_skpar.o qm2_dftb_slkode.o qm2_dftb_slktrafo.o is_init.o amoeba_valence.o amoeba_multipoles.o amoeba_recip.o amoeba_interface.o amoeba_direct.o amoeba_mdin.o amoeba_adjust.o amoeba_self.o amoeba_vdw.o amoeba_induced.o amoeba_runmd.o bintraj.o spatial_recip.o spatial_fft.o evb_vars.o evb_input.o evb_init.o evb_alloc.o evb_dealloc.o check_input.o evb_io.o evb_keywrd.o exchange_CM.o evb_mcp.o evb_force.o diabatic.o evb_2stdebug.o egap_umb_2stdebug.o exchange_gauss.o exchange_warshel.o morsify.o morse_anal2num.o evb_matrix.PIMD.o evb_ntrfc.PIMD.o evb_pimd_init.PIMD.o out_evb.PIMD.o \ ../lmod/lmod.a ../lapack/lapack.a ../blas/blas.a \ ../lib/nxtsec.o ../lib/sys.a /bin/mv sander.exe sander.LES.exe ambmask.exe sander.PIMD.exe ../../exe make[1]: Leaving directory `/usr/local/amber9/src/sander' cd ptraj; make install make[1]: Entering directory `/usr/local/amber9/src/ptraj' gcc -c -O2 -m32 -o main.o main.c gcc -c -O2 -m32 -o rdparm.o rdparm.c gcc -c -O2 -m32 -o dispatch.o dispatch.c gcc -c -O2 -m32 -o help.o help.c gcc -c -O2 -m32 -o utility.o utility.c gcc -c -O2 -m32 -o second.o second.c gcc -c -O2 -m32 -o io.o io.c gcc -c -O2 -m32 -o trajectory.o trajectory.c gcc -c -O2 -m32 -o evec.o evec.c gcc -c -O2 -m32 -o torsion.o torsion.c gcc -c -O2 -m32 -o mask.o mask.c gcc -c -O2 -m32 -o rms.o rms.c gcc -c -O2 -m32 -o display.o display.c gcc -c -O2 -m32 -o interface.o interface.c gcc -c -O2 -m32 -o energy.o energy.c gcc -c -O2 -m32 -o experimental.o experimental.c gcc -c -O2 -m32 -o ptraj.o ptraj.c gcc -c -O2 -m32 -o actions.o actions.c gcc -c -O2 -m32 -o analyze.o analyze.c cpp -traditional -P -xassembler-with-cpp -DLES ../nmode/thermo.f > _thermo.f g95 -c -O0 -fno-second-underscore -ffree-form -o thermo.o _thermo.f cpp -traditional -P -xassembler-with-cpp ../sander/pubfft.f > _pubfft.f g95 -c -O3 -fno-second-underscore -ffree-form -ffree-form -o pubfft.o _pubfft.f In file _pubfft.f:1150 if ( isign == 1) call cfftb(n3,work,table(1,3)) 1 In file _pubfft.f:142 subroutine cfftb (n,c,wsave) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) In file _pubfft.f:1135 if ( isign == 1) call cfftb(n2,work,table(1,2)) 1 In file _pubfft.f:142 subroutine cfftb (n,c,wsave) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) In file _pubfft.f:1120 if ( isign == 1) call cfftb(n1,work,table(1,1)) 1 In file _pubfft.f:142 subroutine cfftb (n,c,wsave) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) In file _pubfft.f:148 call cfftb1 (n,c,wsave,wsave(iw1),wsave(iw2)) 1 In file _pubfft.f:156 subroutine cfftb1 (n,c,ch,wa,ifac) 2 Warning (155): Inconsistent types (REAL(8)/INTEGER(4)) in actual argument lists at (1) and (2) In file _pubfft.f:232 call cfftf1 (n,c,wsave,wsave(iw1),wsave(iw2)) 1 In file _pubfft.f:240 subroutine cfftf1 (n,c,ch,wa,ifac) 2 Warning (155): Inconsistent types (REAL(8)/INTEGER(4)) in actual argument lists at (1) and (2) In file _pubfft.f:1149 if ( isign == -1) call cfftf(n3,work,table(1,3)) 1 In file _pubfft.f:226 subroutine cfftf (n,c,wsave) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) In file _pubfft.f:1134 if ( isign == -1) call cfftf(n2,work,table(1,2)) 1 In file _pubfft.f:226 subroutine cfftf (n,c,wsave) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) In file _pubfft.f:1119 if ( isign == -1) call cfftf(n1,work,table(1,1)) 1 In file _pubfft.f:226 subroutine cfftf (n,c,wsave) 2 Warning (155): Inconsistent types (COMPLEX(8)/REAL(8)) in actual argument lists at (1) and (2) In file _pubfft.f:343 call cffti1 (n,wsave(iw1),wsave(iw2)) 1 In file _pubfft.f:351 subroutine cffti1 (n,wa,ifac) 2 Warning (155): Inconsistent types (REAL(8)/INTEGER(4)) in actual argument lists at (1) and (2) cd ../lapack; make make[2]: Entering directory `/usr/local/amber9/src/lapack' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' ar rv lapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o xerbla.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o r - dsyev.o r - dsygv.o r - dlansy.o r - dsytrd.o r - dorgtr.o r - dsteqr.o r - dsterf.o r - dlascl.o r - dlamch.o r - xerbla.o r - ilaenv.o r - dlassq.o r - dsytd2.o r - dlatrd.o r - dorgql.o r - dorgqr.o r - dlasrt.o r - dlaset.o r - dlanst.o r - dlaev2.o r - dlasr.o r - dlapy2.o r - dlartg.o r - dlae2.o r - dorg2r.o r - dlarft.o r - dlarfb.o r - dorg2l.o r - dlarfg.o r - dlarf.o r - dspev.o r - dlansp.o r - dsptrd.o r - dopgtr.o r - dppsv.o r - dspsv.o r - dgeev.o r - dsptrs.o r - dsptrf.o r - dpptrs.o r - dpptrf.o r - dgebak.o r - dtrevc.o r - dlacpy.o r - dhseqr.o r - dorghr.o r - dgehrd.o r - dgebal.o r - dlange.o r - dlabad.o r - dlahqr.o r - dlarfx.o r - dlanhs.o r - dlaln2.o r - dgehd2.o r - dlahrd.o r - dlanv2.o r - dladiv.o r - dgerq2.o r - dorm2r.o r - dlarnv.o r - dgeqr2.o r - dlaruv.o r - dspevd.o r - dstedc.o r - dopmtr.o r - dlaed0.o r - dlaed1.o r - dlaed7.o r - dlaeda.o r - dlaed8.o r - dlaed9.o r - dlamrg.o r - dlaed2.o r - dlaed3.o r - dpotrf.o r - dsygst.o r - dpotf2.o r - dsygs2.o r - dlaebz.o r - dlagtf.o r - dlagts.o r - dormqr.o r - dormql.o r - dorm2l.o r - dlaed4.o r - dlaed5.o r - dlaed6.o r - ieeeck.o r - dsyevx.o r - dsyevd.o r - dstebz.o r - dstein.o r - dormtr.o r - zheev.o r - lsame.o r - zlanhe.o r - zlascl.o r - zhetrd.o r - zungtr.o r - zsteqr.o r - zlassq.o r - zlatrd.o r - zhetd2.o r - zungql.o r - zungqr.o r - zlasr.o r - zlaset.o r - zlacgv.o r - zlarfg.o r - zung2l.o r - zlarft.o r - zlarfb.o r - zung2r.o r - dlapy3.o r - zladiv.o r - zlarf.o ranlib lapack.a make[2]: Leaving directory `/usr/local/amber9/src/lapack' cd ../arpack; make make[2]: Entering directory `/usr/local/amber9/src/arpack' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' cpp -traditional -P -xassembler-with-cpp ivout.f > _ivout.f g95 -c -O3 -fno-second-underscore -o ivout.o _ivout.f cpp -traditional -P -xassembler-with-cpp dvout.f > _dvout.f g95 -c -O3 -fno-second-underscore -o dvout.o _dvout.f cpp -traditional -P -xassembler-with-cpp dgetv0.f > _dgetv0.f g95 -c -O3 -fno-second-underscore -o dgetv0.o _dgetv0.f cpp -traditional -P -xassembler-with-cpp dlaqrb.f > _dlaqrb.f g95 -c -O3 -fno-second-underscore -o dlaqrb.o _dlaqrb.f cpp -traditional -P -xassembler-with-cpp dnaitr.f > _dnaitr.f g95 -c -O3 -fno-second-underscore -o dnaitr.o _dnaitr.f cpp -traditional -P -xassembler-with-cpp dnapps.f > _dnapps.f g95 -c -O3 -fno-second-underscore -o dnapps.o _dnapps.f cpp -traditional -P -xassembler-with-cpp dnaup2.f > _dnaup2.f g95 -c -O3 -fno-second-underscore -o dnaup2.o _dnaup2.f cpp -traditional -P -xassembler-with-cpp dnaupd.f > _dnaupd.f g95 -c -O3 -fno-second-underscore -o dnaupd.o _dnaupd.f cpp -traditional -P -xassembler-with-cpp dnconv.f > _dnconv.f g95 -c -O3 -fno-second-underscore -o dnconv.o _dnconv.f cpp -traditional -P -xassembler-with-cpp dneigh.f > _dneigh.f g95 -c -O3 -fno-second-underscore -o dneigh.o _dneigh.f cpp -traditional -P -xassembler-with-cpp dmout.f > _dmout.f g95 -c -O3 -fno-second-underscore -o dmout.o _dmout.f cpp -traditional -P -xassembler-with-cpp dneupd.f > _dneupd.f g95 -c -O3 -fno-second-underscore -o dneupd.o _dneupd.f cpp -traditional -P -xassembler-with-cpp dngets.f > _dngets.f g95 -c -O3 -fno-second-underscore -o dngets.o _dngets.f cpp -traditional -P -xassembler-with-cpp dsaitr.f > _dsaitr.f g95 -c -O3 -fno-second-underscore -o dsaitr.o _dsaitr.f cpp -traditional -P -xassembler-with-cpp dsapps.f > _dsapps.f g95 -c -O3 -fno-second-underscore -o dsapps.o _dsapps.f cpp -traditional -P -xassembler-with-cpp dsaup2.f > _dsaup2.f g95 -c -O3 -fno-second-underscore -o dsaup2.o _dsaup2.f cpp -traditional -P -xassembler-with-cpp dsaupd.f > _dsaupd.f g95 -c -O3 -fno-second-underscore -o dsaupd.o _dsaupd.f cpp -traditional -P -xassembler-with-cpp dsconv.f > _dsconv.f g95 -c -O3 -fno-second-underscore -o dsconv.o _dsconv.f cpp -traditional -P -xassembler-with-cpp dseigt.f > _dseigt.f g95 -c -O3 -fno-second-underscore -o dseigt.o _dseigt.f cpp -traditional -P -xassembler-with-cpp dsesrt.f > _dsesrt.f g95 -c -O3 -fno-second-underscore -o dsesrt.o _dsesrt.f cpp -traditional -P -xassembler-with-cpp dseupd.f > _dseupd.f g95 -c -O3 -fno-second-underscore -o dseupd.o _dseupd.f cpp -traditional -P -xassembler-with-cpp dsgets.f > _dsgets.f g95 -c -O3 -fno-second-underscore -o dsgets.o _dsgets.f cpp -traditional -P -xassembler-with-cpp dsortc.f > _dsortc.f g95 -c -O3 -fno-second-underscore -o dsortc.o _dsortc.f cpp -traditional -P -xassembler-with-cpp dsortr.f > _dsortr.f g95 -c -O3 -fno-second-underscore -o dsortr.o _dsortr.f cpp -traditional -P -xassembler-with-cpp dstatn.f > _dstatn.f g95 -c -O3 -fno-second-underscore -o dstatn.o _dstatn.f cpp -traditional -P -xassembler-with-cpp dstats.f > _dstats.f g95 -c -O3 -fno-second-underscore -o dstats.o _dstats.f cpp -traditional -P -xassembler-with-cpp dstqrb.f > _dstqrb.f g95 -c -O3 -fno-second-underscore -o dstqrb.o _dstqrb.f cpp -traditional -P -xassembler-with-cpp svout.f > _svout.f g95 -c -O3 -fno-second-underscore -o svout.o _svout.f cpp -traditional -P -xassembler-with-cpp sgetv0.f > _sgetv0.f g95 -c -O3 -fno-second-underscore -o sgetv0.o _sgetv0.f cpp -traditional -P -xassembler-with-cpp slaqrb.f > _slaqrb.f g95 -c -O3 -fno-second-underscore -o slaqrb.o _slaqrb.f cpp -traditional -P -xassembler-with-cpp snaitr.f > _snaitr.f g95 -c -O3 -fno-second-underscore -o snaitr.o _snaitr.f cpp -traditional -P -xassembler-with-cpp snapps.f > _snapps.f g95 -c -O3 -fno-second-underscore -o snapps.o _snapps.f cpp -traditional -P -xassembler-with-cpp snaup2.f > _snaup2.f g95 -c -O3 -fno-second-underscore -o snaup2.o _snaup2.f cpp -traditional -P -xassembler-with-cpp snaupd.f > _snaupd.f g95 -c -O3 -fno-second-underscore -o snaupd.o _snaupd.f cpp -traditional -P -xassembler-with-cpp snconv.f > _snconv.f g95 -c -O3 -fno-second-underscore -o snconv.o _snconv.f cpp -traditional -P -xassembler-with-cpp sneigh.f > _sneigh.f g95 -c -O3 -fno-second-underscore -o sneigh.o _sneigh.f cpp -traditional -P -xassembler-with-cpp smout.f > _smout.f g95 -c -O3 -fno-second-underscore -o smout.o _smout.f cpp -traditional -P -xassembler-with-cpp sneupd.f > _sneupd.f g95 -c -O3 -fno-second-underscore -o sneupd.o _sneupd.f cpp -traditional -P -xassembler-with-cpp sngets.f > _sngets.f g95 -c -O3 -fno-second-underscore -o sngets.o _sngets.f cpp -traditional -P -xassembler-with-cpp ssaitr.f > _ssaitr.f g95 -c -O3 -fno-second-underscore -o ssaitr.o _ssaitr.f cpp -traditional -P -xassembler-with-cpp ssapps.f > _ssapps.f g95 -c -O3 -fno-second-underscore -o ssapps.o _ssapps.f cpp -traditional -P -xassembler-with-cpp ssaup2.f > _ssaup2.f g95 -c -O3 -fno-second-underscore -o ssaup2.o _ssaup2.f cpp -traditional -P -xassembler-with-cpp ssaupd.f > _ssaupd.f g95 -c -O3 -fno-second-underscore -o ssaupd.o _ssaupd.f cpp -traditional -P -xassembler-with-cpp ssconv.f > _ssconv.f g95 -c -O3 -fno-second-underscore -o ssconv.o _ssconv.f cpp -traditional -P -xassembler-with-cpp sseigt.f > _sseigt.f g95 -c -O3 -fno-second-underscore -o sseigt.o _sseigt.f cpp -traditional -P -xassembler-with-cpp ssesrt.f > _ssesrt.f g95 -c -O3 -fno-second-underscore -o ssesrt.o _ssesrt.f cpp -traditional -P -xassembler-with-cpp sseupd.f > _sseupd.f g95 -c -O3 -fno-second-underscore -o sseupd.o _sseupd.f cpp -traditional -P -xassembler-with-cpp ssgets.f > _ssgets.f g95 -c -O3 -fno-second-underscore -o ssgets.o _ssgets.f cpp -traditional -P -xassembler-with-cpp ssortc.f > _ssortc.f g95 -c -O3 -fno-second-underscore -o ssortc.o _ssortc.f cpp -traditional -P -xassembler-with-cpp ssortr.f > _ssortr.f g95 -c -O3 -fno-second-underscore -o ssortr.o _ssortr.f cpp -traditional -P -xassembler-with-cpp sstatn.f > _sstatn.f g95 -c -O3 -fno-second-underscore -o sstatn.o _sstatn.f cpp -traditional -P -xassembler-with-cpp sstats.f > _sstats.f g95 -c -O3 -fno-second-underscore -o sstats.o _sstats.f cpp -traditional -P -xassembler-with-cpp sstqrb.f > _sstqrb.f g95 -c -O3 -fno-second-underscore -o sstqrb.o _sstqrb.f ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o svout.o sgetv0.o slaqrb.o snaitr.o snapps.o snaup2.o snaupd.o snconv.o sneigh.o smout.o sneupd.o sngets.o ssaitr.o ssapps.o ssaup2.o ssaupd.o ssconv.o sseigt.o ssesrt.o sseupd.o ssgets.o ssortc.o ssortr.o sstatn.o sstats.o sstqrb.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - svout.o a - sgetv0.o a - slaqrb.o a - snaitr.o a - snapps.o a - snaup2.o a - snaupd.o a - snconv.o a - sneigh.o a - smout.o a - sneupd.o a - sngets.o a - ssaitr.o a - ssapps.o a - ssaup2.o a - ssaupd.o a - ssconv.o a - sseigt.o a - ssesrt.o a - sseupd.o a - ssgets.o a - ssortc.o a - ssortr.o a - sstatn.o a - sstats.o a - sstqrb.o ranlib arpack.a make[2]: Leaving directory `/usr/local/amber9/src/arpack' cd ../blas; make make[2]: Entering directory `/usr/local/amber9/src/blas' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' ar rv blas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o r - dasum.o r - daxpy.o r - dcabs1.o r - dcopy.o r - ddot.o r - dgbmv.o r - dgemm.o r - dgemv.o r - dger.o r - dnrm2.o r - drot.o r - drotg.o r - dsbmv.o r - dscal.o r - dspmv.o r - dspr.o r - dspr2.o r - dswap.o r - dsymm.o r - dsymv.o r - dsyr.o r - dsyr2.o r - dsyr2k.o r - dsyrk.o r - dtbmv.o r - dtbsv.o r - dtpmv.o r - dtpsv.o r - dtrmm.o r - dtrmv.o r - dtrsm.o r - dtrsv.o r - dummy.o r - dzasum.o r - dznrm2.o r - idamax.o r - isamax.o r - lsame.o r - scopy.o r - sswap.o r - sscal.o r - sasum.o r - snrm2.o r - sdot.o r - ssyr2k.o r - saxpy.o r - sgemv.o r - ssyr2.o r - ssymv.o r - sgemm.o r - strmm.o r - strmv.o r - sger.o r - zher2k.o r - zswap.o r - zgemv.o r - zhemv.o r - zscal.o r - zdotc.o r - zaxpy.o r - zher2.o r - zdscal.o r - ztrmv.o r - zcopy.o r - ztrmm.o r - zgemm.o r - zgerc.o ranlib blas.a make[2]: Leaving directory `/usr/local/amber9/src/blas' cd ../lib ; make sys.a make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `sys.a' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' cd pdb; make make[2]: Entering directory `/usr/local/amber9/src/ptraj/pdb' gcc -c -O2 -m32 -o pdbrun.o pdbrun.c gcc -c -O2 -m32 -o pdb_read.o pdb_read.c gcc -c -O2 -m32 -o pdb_sprntf.o pdb_sprntf.c gcc -c -O2 -m32 -o pdb_sscanf.o pdb_sscanf.c gcc -c -O2 -m32 -o pdb_write.o pdb_write.c gcc -c -O2 -m32 -o ms.o ms.c ar rv libpdb.a pdbrun.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o ms.o ar: creating libpdb.a a - pdbrun.o a - pdb_read.o a - pdb_sprntf.o a - pdb_sscanf.o a - pdb_write.o a - ms.o ranlib libpdb.a make[2]: Leaving directory `/usr/local/amber9/src/ptraj/pdb' g95 -ffree-form -o rdparm.exe main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o pdb/libpdb.a ../arpack/arpack.a ../lapack/lapack.a ../blas/blas.a ../lib/sys.a g95 -ffree-form -o ptraj.exe main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o pdb/libpdb.a ../arpack/arpack.a ../lapack/lapack.a ../blas/blas.a ../lib/sys.a /bin/mv rdparm.exe ptraj.exe ../../exe make[1]: Leaving directory `/usr/local/amber9/src/ptraj' cd nmr_aux; make install make[1]: Entering directory `/usr/local/amber9/src/nmr_aux' cd prepare_input; make clean ; make install make[2]: Entering directory `/usr/local/amber9/src/nmr_aux/prepare_input' /bin/rm *.o _*.f makeDIST_RST.exe makeANG_RST.exe makeSHF.cp makeCHIR_RST.cp \ makeDIP_RST.protein.cp makeDIP_RST.dna.cp /bin/rm: cannot remove `*.o': No such file or directory /bin/rm: cannot remove `_*.f': No such file or directory /bin/rm: cannot remove `makeDIST_RST.exe': No such file or directory /bin/rm: cannot remove `makeANG_RST.exe': No such file or directory /bin/rm: cannot remove `makeSHF.cp': No such file or directory /bin/rm: cannot remove `makeCHIR_RST.cp': No such file or directory /bin/rm: cannot remove `makeDIP_RST.protein.cp': No such file or directory /bin/rm: cannot remove `makeDIP_RST.dna.cp': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/usr/local/amber9/src/nmr_aux/prepare_input' make[2]: Entering directory `/usr/local/amber9/src/nmr_aux/prepare_input' gcc -c -O2 -m32 -o makeDIST_RST.o makeDIST_RST.c gcc -o makeDIST_RST.exe makeDIST_RST.o -lm gcc -c -O2 -m32 -o makeANG_RST.o makeANG_RST.c gcc -o makeANG_RST.exe makeANG_RST.o -lm /bin/rm -f makeSHF_RST.cp makeCHIR_RST.cp makeDIP_RST.protein.cp \ makeDIP_RST.dna.cp cp makeSHF_RST makeSHF_RST.cp cp makeCHIR_RST makeCHIR_RST.cp cp makeDIP_RST.protein makeDIP_RST.protein.cp cp makeDIP_RST.dna makeDIP_RST.dna.cp chmod 755 makeDIST_RST.exe makeANG_RST.exe makeSHF_RST.cp makeCHIR_RST.cp \ makeDIP_RST.protein.cp makeDIP_RST.dna.cp mv makeDIST_RST.exe makeANG_RST.exe ../../../exe mv makeCHIR_RST.cp ../../../exe/makeCHIR_RST mv makeSHF_RST.cp ../../../exe/makeSHF_RST mv makeDIP_RST.protein.cp ../../../exe/makeDIP_RST.protein mv makeDIP_RST.dna.cp ../../../exe/makeDIP_RST.dna cp map.DG-AMBER ../../../dat cp map.Brook-AMBER ../../../dat make[2]: Leaving directory `/usr/local/amber9/src/nmr_aux/prepare_input' cd fantasian; make clean ; make install make[2]: Entering directory `/usr/local/amber9/src/nmr_aux/fantasian' /bin/rm *.o _*.f fantasian.exe /bin/rm: cannot remove `*.o': No such file or directory /bin/rm: cannot remove `_*.f': No such file or directory /bin/rm: cannot remove `fantasian.exe': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/usr/local/amber9/src/nmr_aux/fantasian' make[2]: Entering directory `/usr/local/amber9/src/nmr_aux/fantasian' cpp -traditional -P -xassembler-with-cpp fantasian.f > _fantasian.f g95 -c -O0 -fno-second-underscore -o fantasian.o _fantasian.f g95 -o fantasian.exe fantasian.o ../../lib/random.o ../../lib/mexit.o mv fantasian.exe ../../../exe/ make[2]: Leaving directory `/usr/local/amber9/src/nmr_aux/fantasian' cp senergy sviol sviol2 ../../exe make[1]: Leaving directory `/usr/local/amber9/src/nmr_aux' cd nmode; make install make[1]: Entering directory `/usr/local/amber9/src/nmode' cpp -traditional -P -xassembler-with-cpp nmode.f > _nmode.f g95 -c -O0 -fno-second-underscore -ffree-form -o nmode.o _nmode.f In file _nmode.f:385 call mweight(x(mh),x(mf),x(1),0,nr3,x(mamass),dummy,dummy) 1 In file _nmode.f:325 ,x(mamass),x(mcvec),nvect) 2 Warning (155): Inconsistent types (REAL(8)/INTEGER(4)) in actual argument lists at (1) and (2) In file _nmode.f:314 call writlw(lworki,x(mcscr+4*ns3)) 1 In file _nmode.f:427 subroutine writlw(lworki,iw) 2 Warning (155): Inconsistent types (REAL(8)/INTEGER(4)) in actual argument lists at (1) and (2) cpp -traditional -P -xassembler-with-cpp alloc.f > _alloc.f g95 -c -O0 -fno-second-underscore -ffree-form -o alloc.o _alloc.f cpp -traditional -P -xassembler-with-cpp angl.f > _angl.f g95 -c -O3 -fno-second-underscore -ffree-form -o angl.o _angl.f cpp -traditional -P -xassembler-with-cpp assert.f > _assert.f g95 -c -O0 -fno-second-underscore -ffree-form -o assert.o _assert.f cpp -traditional -P -xassembler-with-cpp bond.f > _bond.f g95 -c -O3 -fno-second-underscore -ffree-form -o bond.o _bond.f cpp -traditional -P -xassembler-with-cpp bresna.f > _bresna.f g95 -c -O3 -fno-second-underscore -ffree-form -o bresna.o _bresna.f cpp -traditional -P -xassembler-with-cpp cdiv.f > _cdiv.f g95 -c -O0 -fno-second-underscore -ffree-form -o cdiv.o _cdiv.f cpp -traditional -P -xassembler-with-cpp chck.f > _chck.f g95 -c -O0 -fno-second-underscore -ffree-form -o chck.o _chck.f cpp -traditional -P -xassembler-with-cpp chdir.f > _chdir.f g95 -c -O0 -fno-second-underscore -ffree-form -o chdir.o _chdir.f cpp -traditional -P -xassembler-with-cpp chlamba.f > _chlamba.f g95 -c -O0 -fno-second-underscore -ffree-form -o chlamba.o _chlamba.f cpp -traditional -P -xassembler-with-cpp debug.f > _debug.f g95 -c -O0 -fno-second-underscore -ffree-form -o debug.o _debug.f cpp -traditional -P -xassembler-with-cpp difang.f > _difang.f g95 -c -O0 -fno-second-underscore -ffree-form -o difang.o _difang.f cpp -traditional -P -xassembler-with-cpp difbon.f > _difbon.f g95 -c -O0 -fno-second-underscore -ffree-form -o difbon.o _difbon.f cpp -traditional -P -xassembler-with-cpp dihdup.f > _dihdup.f g95 -c -O0 -fno-second-underscore -ffree-form -o dihdup.o _dihdup.f cpp -traditional -P -xassembler-with-cpp dihed.f > _dihed.f g95 -c -O0 -fno-second-underscore -ffree-form -o dihed.o _dihed.f cpp -traditional -P -xassembler-with-cpp dirch.f > _dirch.f g95 -c -O0 -fno-second-underscore -ffree-form -o dirch.o _dirch.f cpp -traditional -P -xassembler-with-cpp dsort.f > _dsort.f g95 -c -O0 -fno-second-underscore -ffree-form -o dsort.o _dsort.f cpp -traditional -P -xassembler-with-cpp eigout.f > _eigout.f g95 -c -O0 -fno-second-underscore -ffree-form -o eigout.o _eigout.f cpp -traditional -P -xassembler-with-cpp ephi.f > _ephi.f g95 -c -O0 -fno-second-underscore -ffree-form -o ephi.o _ephi.f cpp -traditional -P -xassembler-with-cpp eprnt.f > _eprnt.f g95 -c -O0 -fno-second-underscore -ffree-form -o eprnt.o _eprnt.f cpp -traditional -P -xassembler-with-cpp errstp.f > _errstp.f g95 -c -O0 -fno-second-underscore -ffree-form -o errstp.o _errstp.f cpp -traditional -P -xassembler-with-cpp findl.f > _findl.f g95 -c -O0 -fno-second-underscore -ffree-form -o findl.o _findl.f cpp -traditional -P -xassembler-with-cpp forces.f > _forces.f g95 -c -O0 -fno-second-underscore -ffree-form -o forces.o _forces.f cpp -traditional -P -xassembler-with-cpp getcor.f > _getcor.f g95 -c -O0 -fno-second-underscore -ffree-form -o getcor.o _getcor.f cpp -traditional -P -xassembler-with-cpp getf.f > _getf.f g95 -c -O0 -fno-second-underscore -ffree-form -o getf.o _getf.f cpp -traditional -P -xassembler-with-cpp getm.f > _getm.f g95 -c -O0 -fno-second-underscore -ffree-form -o getm.o _getm.f cpp -traditional -P -xassembler-with-cpp getref.f > _getref.f g95 -c -O0 -fno-second-underscore -ffree-form -o getref.o _getref.f cpp -traditional -P -xassembler-with-cpp grdmax.f > _grdmax.f g95 -c -O0 -fno-second-underscore -ffree-form -o grdmax.o _grdmax.f cpp -traditional -P -xassembler-with-cpp level.f > _level.f g95 -c -O0 -fno-second-underscore -ffree-form -o level.o _level.f cpp -traditional -P -xassembler-with-cpp lmdout.f > _lmdout.f g95 -c -O0 -fno-second-underscore -ffree-form -o lmdout.o _lmdout.f cpp -traditional -P -xassembler-with-cpp lmode.f > _lmode.f g95 -c -O0 -fno-second-underscore -ffree-form -o lmode.o _lmode.f cpp -traditional -P -xassembler-with-cpp makel.f > _makel.f g95 -c -O0 -fno-second-underscore -ffree-form -o makel.o _makel.f cpp -traditional -P -xassembler-with-cpp movecm.f > _movecm.f g95 -c -O0 -fno-second-underscore -ffree-form -o movecm.o _movecm.f cpp -traditional -P -xassembler-with-cpp mweight.f > _mweight.f g95 -c -O0 -fno-second-underscore -ffree-form -o mweight.o _mweight.f cpp -traditional -P -xassembler-with-cpp mweit.f > _mweit.f g95 -c -O0 -fno-second-underscore -ffree-form -o mweit.o _mweit.f cpp -traditional -P -xassembler-with-cpp new_stuff.f > _new_stuff.f g95 -c -O0 -fno-second-underscore -ffree-form -o new_stuff.o _new_stuff.f cpp -traditional -P -xassembler-with-cpp nmdfil.f > _nmdfil.f g95 -c -O0 -fno-second-underscore -ffree-form -o nmdfil.o _nmdfil.f cpp -traditional -P -xassembler-with-cpp nonbon.f > _nonbon.f g95 -c -O3 -fno-second-underscore -ffree-form -o nonbon.o _nonbon.f cpp -traditional -P -xassembler-with-cpp nonbon1.f > _nonbon1.f g95 -c -O3 -fno-second-underscore -ffree-form -o nonbon1.o _nonbon1.f cpp -traditional -P -xassembler-with-cpp norm.f > _norm.f g95 -c -O0 -fno-second-underscore -ffree-form -o norm.o _norm.f cpp -traditional -P -xassembler-with-cpp norml.f > _norml.f g95 -c -O0 -fno-second-underscore -ffree-form -o norml.o _norml.f cpp -traditional -P -xassembler-with-cpp nrch.f > _nrch.f g95 -c -O0 -fno-second-underscore -ffree-form -o nrch.o _nrch.f cpp -traditional -P -xassembler-with-cpp oseen.f > _oseen.f g95 -c -O0 -fno-second-underscore -ffree-form -o oseen.o _oseen.f cpp -traditional -P -xassembler-with-cpp pairr.f > _pairr.f g95 -c -O0 -fno-second-underscore -ffree-form -o pairr.o _pairr.f cpp -traditional -P -xassembler-with-cpp pairw.f > _pairw.f g95 -c -O0 -fno-second-underscore -ffree-form -o pairw.o _pairw.f cpp -traditional -P -xassembler-with-cpp percon.f > _percon.f g95 -c -O0 -fno-second-underscore -ffree-form -o percon.o _percon.f cpp -traditional -P -xassembler-with-cpp pload.f > _pload.f g95 -c -O0 -fno-second-underscore -ffree-form -o pload.o _pload.f cpp -traditional -P -xassembler-with-cpp putvar.f > _putvar.f g95 -c -O0 -fno-second-underscore -ffree-form -o putvar.o _putvar.f cpp -traditional -P -xassembler-with-cpp rdinp.f > _rdinp.f g95 -c -O0 -fno-second-underscore -ffree-form -o rdinp.o _rdinp.f cpp -traditional -P -xassembler-with-cpp rdparm.f > _rdparm.f g95 -c -O3 -fno-second-underscore -ffree-form -o rdparm.o _rdparm.f cpp -traditional -P -xassembler-with-cpp remrot.f > _remrot.f g95 -c -O0 -fno-second-underscore -ffree-form -o remrot.o _remrot.f cpp -traditional -P -xassembler-with-cpp resdis.f > _resdis.f g95 -c -O3 -fno-second-underscore -ffree-form -o resdis.o _resdis.f cpp -traditional -P -xassembler-with-cpp savec.f > _savec.f g95 -c -O0 -fno-second-underscore -ffree-form -o savec.o _savec.f cpp -traditional -P -xassembler-with-cpp savei.f > _savei.f g95 -c -O0 -fno-second-underscore -ffree-form -o savei.o _savei.f cpp -traditional -P -xassembler-with-cpp savet.f > _savet.f g95 -c -O0 -fno-second-underscore -ffree-form -o savet.o _savet.f cpp -traditional -P -xassembler-with-cpp setang.f > _setang.f g95 -c -O0 -fno-second-underscore -ffree-form -o setang.o _setang.f cpp -traditional -P -xassembler-with-cpp setatm.f > _setatm.f g95 -c -O0 -fno-second-underscore -ffree-form -o setatm.o _setatm.f cpp -traditional -P -xassembler-with-cpp setbon.f > _setbon.f g95 -c -O0 -fno-second-underscore -ffree-form -o setbon.o _setbon.f cpp -traditional -P -xassembler-with-cpp setcor.f > _setcor.f g95 -c -O0 -fno-second-underscore -ffree-form -o setcor.o _setcor.f cpp -traditional -P -xassembler-with-cpp setdih.f > _setdih.f g95 -c -O0 -fno-second-underscore -ffree-form -o setdih.o _setdih.f cpp -traditional -P -xassembler-with-cpp setgam.f > _setgam.f g95 -c -O0 -fno-second-underscore -ffree-form -o setgam.o _setgam.f cpp -traditional -P -xassembler-with-cpp setgr.f > _setgr.f g95 -c -O0 -fno-second-underscore -ffree-form -o setgr.o _setgr.f cpp -traditional -P -xassembler-with-cpp setvar.f > _setvar.f g95 -c -O0 -fno-second-underscore -ffree-form -o setvar.o _setvar.f cpp -traditional -P -xassembler-with-cpp spsort.f > _spsort.f g95 -c -O0 -fno-second-underscore -ffree-form -o spsort.o _spsort.f cpp -traditional -P -xassembler-with-cpp thermo.f > _thermo.f g95 -c -O0 -fno-second-underscore -ffree-form -o thermo.o _thermo.f cpp -traditional -P -xassembler-with-cpp timit.f > _timit.f g95 -c -O0 -fno-second-underscore -ffree-form -o timit.o _timit.f cpp -traditional -P -xassembler-with-cpp traco.f > _traco.f g95 -c -O0 -fno-second-underscore -ffree-form -o traco.o _traco.f cpp -traditional -P -xassembler-with-cpp tsearch.f > _tsearch.f g95 -c -O0 -fno-second-underscore -ffree-form -o tsearch.o _tsearch.f cpp -traditional -P -xassembler-with-cpp tstate.f > _tstate.f g95 -c -O0 -fno-second-underscore -ffree-form -o tstate.o _tstate.f cpp -traditional -P -xassembler-with-cpp xconst.f > _xconst.f g95 -c -O0 -fno-second-underscore -ffree-form -o xconst.o _xconst.f cpp -traditional -P -xassembler-with-cpp zerout.f > _zerout.f g95 -c -O0 -fno-second-underscore -ffree-form -o zerout.o _zerout.f cpp -traditional -P -xassembler-with-cpp zxcgr.f > _zxcgr.f g95 -c -O0 -fno-second-underscore -ffree-form -o zxcgr.o _zxcgr.f cpp -traditional -P -xassembler-with-cpp mexit.f > _mexit.f g95 -c -O0 -fno-second-underscore -ffree-form -o mexit.o _mexit.f cd ../lib ; ./Makelist ../lib/rfree.o ../lib/matinv.o ../lib/nxtsec.o ../lib/amopen.o ../lib/rgroup.o make[2]: Entering directory `/usr/local/amber9/src/lib' cpp -traditional -P -xassembler-with-cpp rfree.f > _rfree.f g95 -c -O0 -fno-second-underscore -o rfree.o _rfree.f make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' cpp -traditional -P -xassembler-with-cpp matinv.f > _matinv.f g95 -c -O0 -fno-second-underscore -o matinv.o _matinv.f make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' cpp -traditional -P -xassembler-with-cpp amopen.f > _amopen.f g95 -c -O0 -fno-second-underscore -o amopen.o _amopen.f make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' cpp -traditional -P -xassembler-with-cpp rgroup.f > _rgroup.f g95 -c -O0 -fno-second-underscore -o rgroup.o _rgroup.f make[2]: Leaving directory `/usr/local/amber9/src/lib' cd ../lib; make sys.a make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `sys.a' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' cd ../lapack; make make[2]: Entering directory `/usr/local/amber9/src/lapack' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' ar rv lapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o xerbla.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o r - dsyev.o r - dsygv.o r - dlansy.o r - dsytrd.o r - dorgtr.o r - dsteqr.o r - dsterf.o r - dlascl.o r - dlamch.o r - xerbla.o r - ilaenv.o r - dlassq.o r - dsytd2.o r - dlatrd.o r - dorgql.o r - dorgqr.o r - dlasrt.o r - dlaset.o r - dlanst.o r - dlaev2.o r - dlasr.o r - dlapy2.o r - dlartg.o r - dlae2.o r - dorg2r.o r - dlarft.o r - dlarfb.o r - dorg2l.o r - dlarfg.o r - dlarf.o r - dspev.o r - dlansp.o r - dsptrd.o r - dopgtr.o r - dppsv.o r - dspsv.o r - dgeev.o r - dsptrs.o r - dsptrf.o r - dpptrs.o r - dpptrf.o r - dgebak.o r - dtrevc.o r - dlacpy.o r - dhseqr.o r - dorghr.o r - dgehrd.o r - dgebal.o r - dlange.o r - dlabad.o r - dlahqr.o r - dlarfx.o r - dlanhs.o r - dlaln2.o r - dgehd2.o r - dlahrd.o r - dlanv2.o r - dladiv.o r - dgerq2.o r - dorm2r.o r - dlarnv.o r - dgeqr2.o r - dlaruv.o r - dspevd.o r - dstedc.o r - dopmtr.o r - dlaed0.o r - dlaed1.o r - dlaed7.o r - dlaeda.o r - dlaed8.o r - dlaed9.o r - dlamrg.o r - dlaed2.o r - dlaed3.o r - dpotrf.o r - dsygst.o r - dpotf2.o r - dsygs2.o r - dlaebz.o r - dlagtf.o r - dlagts.o r - dormqr.o r - dormql.o r - dorm2l.o r - dlaed4.o r - dlaed5.o r - dlaed6.o r - ieeeck.o r - dsyevx.o r - dsyevd.o r - dstebz.o r - dstein.o r - dormtr.o r - zheev.o r - lsame.o r - zlanhe.o r - zlascl.o r - zhetrd.o r - zungtr.o r - zsteqr.o r - zlassq.o r - zlatrd.o r - zhetd2.o r - zungql.o r - zungqr.o r - zlasr.o r - zlaset.o r - zlacgv.o r - zlarfg.o r - zung2l.o r - zlarft.o r - zlarfb.o r - zung2r.o r - dlapy3.o r - zladiv.o r - zlarf.o ranlib lapack.a make[2]: Leaving directory `/usr/local/amber9/src/lapack' cd ../blas; make make[2]: Entering directory `/usr/local/amber9/src/blas' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' ar rv blas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o r - dasum.o r - daxpy.o r - dcabs1.o r - dcopy.o r - ddot.o r - dgbmv.o r - dgemm.o r - dgemv.o r - dger.o r - dnrm2.o r - drot.o r - drotg.o r - dsbmv.o r - dscal.o r - dspmv.o r - dspr.o r - dspr2.o r - dswap.o r - dsymm.o r - dsymv.o r - dsyr.o r - dsyr2.o r - dsyr2k.o r - dsyrk.o r - dtbmv.o r - dtbsv.o r - dtpmv.o r - dtpsv.o r - dtrmm.o r - dtrmv.o r - dtrsm.o r - dtrsv.o r - dummy.o r - dzasum.o r - dznrm2.o r - idamax.o r - isamax.o r - lsame.o r - scopy.o r - sswap.o r - sscal.o r - sasum.o r - snrm2.o r - sdot.o r - ssyr2k.o r - saxpy.o r - sgemv.o r - ssyr2.o r - ssymv.o r - sgemm.o r - strmm.o r - strmv.o r - sger.o r - zher2k.o r - zswap.o r - zgemv.o r - zhemv.o r - zscal.o r - zdotc.o r - zaxpy.o r - zher2.o r - zdscal.o r - ztrmv.o r - zcopy.o r - ztrmm.o r - zgemm.o r - zgerc.o ranlib blas.a make[2]: Leaving directory `/usr/local/amber9/src/blas' g95 -ffree-form -o nmode.exe nmode.o alloc.o angl.o assert.o bond.o bresna.o cdiv.o chck.o chdir.o chlamba.o debug.o difang.o difbon.o dihdup.o dihed.o dirch.o dsort.o eigout.o ephi.o eprnt.o errstp.o findl.o forces.o getcor.o getf.o getm.o getref.o grdmax.o level.o lmdout.o lmode.o makel.o movecm.o mweight.o mweit.o new_stuff.o nmdfil.o nonbon.o nonbon1.o norm.o norml.o nrch.o oseen.o pairr.o pairw.o percon.o pload.o putvar.o rdinp.o rdparm.o remrot.o resdis.o savec.o savei.o savet.o setang.o setatm.o setbon.o setcor.o setdih.o setgam.o setgr.o setvar.o spsort.o thermo.o timit.o traco.o tsearch.o tstate.o xconst.o zerout.o zxcgr.o mexit.o ../lib/rfree.o ../lib/matinv.o ../lib/nxtsec.o ../lib/amopen.o ../lib/rgroup.o \ ../lib/sys.a ../lapack/lapack.a ../blas/blas.a /bin/mv nmode.exe ../../exe make[1]: Leaving directory `/usr/local/amber9/src/nmode' cd resp; make install make[1]: Entering directory `/usr/local/amber9/src/resp' cpp -traditional -P -xassembler-with-cpp resp.f > _resp.f g95 -c -O0 -fno-second-underscore -o resp.o _resp.f cd ../lib ; ./Makelist ../lib/mexit.o ../lib/amopen.o ../lib/lapack.o make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `mexit.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `amopen.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' cpp -traditional -P -xassembler-with-cpp lapack.f > _lapack.f g95 -c -O0 -fno-second-underscore -o lapack.o _lapack.f make[2]: Leaving directory `/usr/local/amber9/src/lib' cd ../lib ; make sys.a make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `sys.a' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' g95 -o resp.exe resp.o ../lib/mexit.o ../lib/amopen.o ../lib/lapack.o ../lib/sys.a /bin/mv resp.exe ../../exe/ make[1]: Leaving directory `/usr/local/amber9/src/resp' cd protonate; make install make[1]: Entering directory `/usr/local/amber9/src/protonate' cpp -traditional -P -xassembler-with-cpp pol_h.f > _pol_h.f g95 -c -O0 -fno-second-underscore -o pol_h.o _pol_h.f cpp -traditional -P -xassembler-with-cpp stm_sel.f > _stm_sel.f g95 -c -O0 -fno-second-underscore -o stm_sel.o _stm_sel.f cpp -traditional -P -xassembler-with-cpp sortf_as.f > _sortf_as.f g95 -c -O0 -fno-second-underscore -o sortf_as.o _sortf_as.f cd ../lib ; ./Makelist ../lib/mexit.o ../lib/amopen.o make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `mexit.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `amopen.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' cd ../lib; make sys.a make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `sys.a' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' g95 -o pol_h.exe pol_h.o stm_sel.o sortf_as.o ../lib/mexit.o ../lib/amopen.o ../lib/sys.a cpp -traditional -P -xassembler-with-cpp protonate.f > _protonate.f g95 -c -O0 -fno-second-underscore -o protonate.o _protonate.f g95 -o protonate.exe protonate.o ../lib/mexit.o ../lib/amopen.o ../lib/sys.a cpp -traditional -P -xassembler-with-cpp gwh.f > _gwh.f g95 -c -O0 -fno-second-underscore -o gwh.o _gwh.f cpp -traditional -P -xassembler-with-cpp pdbatm.f > _pdbatm.f g95 -c -O0 -fno-second-underscore -o pdbatm.o _pdbatm.f cpp -traditional -P -xassembler-with-cpp pdbhet2.f > _pdbhet2.f g95 -c -O0 -fno-second-underscore -o pdbhet2.o _pdbhet2.f cpp -traditional -P -xassembler-with-cpp top_3.f > _top_3.f g95 -c -O0 -fno-second-underscore -o top_3.o _top_3.f g95 -o gwh.exe gwh.o pdbatm.o pdbhet2.o top_3.o stm_sel.o sortf_as.o ../lib/mexit.o ../lib/amopen.o ../lib/sys.a mv pol_h.exe protonate.exe gwh.exe ../../exe/ make[1]: Leaving directory `/usr/local/amber9/src/protonate' cd anal; make install make[1]: Entering directory `/usr/local/amber9/src/anal' cpp -traditional -P -xassembler-with-cpp anafil.f > _anafil.f g95 -c -O0 -fno-second-underscore -o anafil.o _anafil.f cpp -traditional -P -xassembler-with-cpp analgr.f > _analgr.f g95 -c -O0 -fno-second-underscore -o analgr.o _analgr.f cpp -traditional -P -xassembler-with-cpp analys.f > _analys.f g95 -c -O0 -fno-second-underscore -o analys.o _analys.f In file _analys.f:181 CALL ANALGR(IFGRAD) 1 In file _analys.f:125 CALL ANALGR 2 Warning (154): Inconsistent number of arguments in reference to 'analgr' at (1) and (2) cpp -traditional -P -xassembler-with-cpp angl.f > _angl.f g95 -c -O0 -fno-second-underscore -o angl.o _angl.f cpp -traditional -P -xassembler-with-cpp anglp.f > _anglp.f g95 -c -O0 -fno-second-underscore -o anglp.o _anglp.f cpp -traditional -P -xassembler-with-cpp bangle.f > _bangle.f g95 -c -O0 -fno-second-underscore -o bangle.o _bangle.f cpp -traditional -P -xassembler-with-cpp bond.f > _bond.f g95 -c -O0 -fno-second-underscore -o bond.o _bond.f cpp -traditional -P -xassembler-with-cpp calhb.f > _calhb.f g95 -c -O0 -fno-second-underscore -o calhb.o _calhb.f cpp -traditional -P -xassembler-with-cpp chain.f > _chain.f g95 -c -O0 -fno-second-underscore -o chain.o _chain.f cpp -traditional -P -xassembler-with-cpp clear.f > _clear.f g95 -c -O0 -fno-second-underscore -o clear.o _clear.f cpp -traditional -P -xassembler-with-cpp compact.f > _compact.f g95 -c -O0 -fno-second-underscore -o compact.o _compact.f cpp -traditional -P -xassembler-with-cpp dist.f > _dist.f g95 -c -O0 -fno-second-underscore -o dist.o _dist.f cpp -traditional -P -xassembler-with-cpp egout.f > _egout.f g95 -c -O0 -fno-second-underscore -o egout.o _egout.f cpp -traditional -P -xassembler-with-cpp ephi.f > _ephi.f g95 -c -O0 -fno-second-underscore -o ephi.o _ephi.f cpp -traditional -P -xassembler-with-cpp gaus80.f > _gaus80.f g95 -c -O0 -fno-second-underscore -o gaus80.o _gaus80.f cpp -traditional -P -xassembler-with-cpp gauss.f > _gauss.f g95 -c -O0 -fno-second-underscore -o gauss.o _gauss.f cpp -traditional -P -xassembler-with-cpp getall.f > _getall.f g95 -c -O0 -fno-second-underscore -o getall.o _getall.f cpp -traditional -P -xassembler-with-cpp getcmn.f > _getcmn.f g95 -c -O0 -fno-second-underscore -o getcmn.o _getcmn.f cpp -traditional -P -xassembler-with-cpp hangl.f > _hangl.f g95 -c -O0 -fno-second-underscore -o hangl.o _hangl.f cpp -traditional -P -xassembler-with-cpp haxis.f > _haxis.f g95 -c -O0 -fno-second-underscore -o haxis.o _haxis.f cpp -traditional -P -xassembler-with-cpp hbond.f > _hbond.f g95 -c -O0 -fno-second-underscore -o hbond.o _hbond.f cpp -traditional -P -xassembler-with-cpp hbout.f > _hbout.f g95 -c -O0 -fno-second-underscore -o hbout.o _hbout.f cpp -traditional -P -xassembler-with-cpp locmem.f > _locmem.f g95 -c -O0 -fno-second-underscore -o locmem.o _locmem.f cpp -traditional -P -xassembler-with-cpp lsqstr.f > _lsqstr.f g95 -c -O0 -fno-second-underscore -o lsqstr.o _lsqstr.f cpp -traditional -P -xassembler-with-cpp matind.f > _matind.f g95 -c -O0 -fno-second-underscore -o matind.o _matind.f cpp -traditional -P -xassembler-with-cpp mdbox.f > _mdbox.f g95 -c -O0 -fno-second-underscore -o mdbox.o _mdbox.f cpp -traditional -P -xassembler-with-cpp mdread.f > _mdread.f g95 -c -O0 -fno-second-underscore -o mdread.o _mdread.f cpp -traditional -P -xassembler-with-cpp minv.f > _minv.f g95 -c -O0 -fno-second-underscore -o minv.o _minv.f cpp -traditional -P -xassembler-with-cpp movecm.f > _movecm.f g95 -c -O0 -fno-second-underscore -o movecm.o _movecm.f cpp -traditional -P -xassembler-with-cpp nhbpar.f > _nhbpar.f g95 -c -O0 -fno-second-underscore -o nhbpar.o _nhbpar.f cpp -traditional -P -xassembler-with-cpp pdbout.f > _pdbout.f g95 -c -O0 -fno-second-underscore -o pdbout.o _pdbout.f cpp -traditional -P -xassembler-with-cpp pdbrit.f > _pdbrit.f g95 -c -O0 -fno-second-underscore -o pdbrit.o _pdbrit.f cpp -traditional -P -xassembler-with-cpp percon.f > _percon.f g95 -c -O0 -fno-second-underscore -o percon.o _percon.f cpp -traditional -P -xassembler-with-cpp prtri.f > _prtri.f g95 -c -O0 -fno-second-underscore -o prtri.o _prtri.f cpp -traditional -P -xassembler-with-cpp prtrin.f > _prtrin.f g95 -c -O0 -fno-second-underscore -o prtrin.o _prtrin.f cpp -traditional -P -xassembler-with-cpp puck.f > _puck.f g95 -c -O0 -fno-second-underscore -o puck.o _puck.f cpp -traditional -P -xassembler-with-cpp radgy.f > _radgy.f g95 -c -O0 -fno-second-underscore -o radgy.o _radgy.f cpp -traditional -P -xassembler-with-cpp rdparm.f > _rdparm.f g95 -c -O0 -fno-second-underscore -o rdparm.o _rdparm.f cpp -traditional -P -xassembler-with-cpp rdrest.f > _rdrest.f g95 -c -O0 -fno-second-underscore -o rdrest.o _rdrest.f cpp -traditional -P -xassembler-with-cpp resdis.f > _resdis.f g95 -c -O0 -fno-second-underscore -o resdis.o _resdis.f cpp -traditional -P -xassembler-with-cpp resnbn.f > _resnbn.f g95 -c -O0 -fno-second-underscore -o resnbn.o _resnbn.f cpp -traditional -P -xassembler-with-cpp resnbp.f > _resnbp.f g95 -c -O0 -fno-second-underscore -o resnbp.o _resnbp.f cpp -traditional -P -xassembler-with-cpp rms.f > _rms.f g95 -c -O0 -fno-second-underscore -o rms.o _rms.f In file _rms.f:104 CALL CLOSC(35) 1 In file _rms.f:88 CALL CLOSC(lun,0) 2 Warning (154): Inconsistent number of arguments in reference to 'closc' at (1) and (2) cpp -traditional -P -xassembler-with-cpp rmsfit.f > _rmsfit.f g95 -c -O0 -fno-second-underscore -o rmsfit.o _rmsfit.f cpp -traditional -P -xassembler-with-cpp rmsmov.f > _rmsmov.f g95 -c -O0 -fno-second-underscore -o rmsmov.o _rmsmov.f cpp -traditional -P -xassembler-with-cpp stell.f > _stell.f g95 -c -O0 -fno-second-underscore -o stell.o _stell.f cpp -traditional -P -xassembler-with-cpp stogrd.f > _stogrd.f g95 -c -O0 -fno-second-underscore -o stogrd.o _stogrd.f cpp -traditional -P -xassembler-with-cpp sumgrp.f > _sumgrp.f g95 -c -O0 -fno-second-underscore -o sumgrp.o _sumgrp.f cpp -traditional -P -xassembler-with-cpp tell.f > _tell.f g95 -c -O0 -fno-second-underscore -o tell.o _tell.f In file _tell.f:51 call stell(nbona,ntheta,nphia,ix(i18),ix(i20),ix(i32),ix(i34), 1 In file _tell.f:46 call stell(nbonh,ntheth,nphih,ix(i12),ix(i14),ix(i24),ix(i26), 2 Warning (154): Inconsistent number of arguments in reference to 'stell' at (1) and (2) cpp -traditional -P -xassembler-with-cpp tilang.f > _tilang.f g95 -c -O0 -fno-second-underscore -o tilang.o _tilang.f cpp -traditional -P -xassembler-with-cpp tilt.f > _tilt.f g95 -c -O0 -fno-second-underscore -o tilt.o _tilt.f cpp -traditional -P -xassembler-with-cpp tors.f > _tors.f g95 -c -O0 -fno-second-underscore -o tors.o _tors.f cpp -traditional -P -xassembler-with-cpp traco.f > _traco.f g95 -c -O0 -fno-second-underscore -o traco.o _traco.f cpp -traditional -P -xassembler-with-cpp vect.f > _vect.f g95 -c -O0 -fno-second-underscore -o vect.o _vect.f cpp -traditional -P -xassembler-with-cpp volume.f > _volume.f g95 -c -O0 -fno-second-underscore -o volume.o _volume.f cpp -traditional -P -xassembler-with-cpp xconst.f > _xconst.f g95 -c -O0 -fno-second-underscore -o xconst.o _xconst.f cd ../lib ; ./Makelist ../lib/rfree.o ../lib/rgroup.o ../lib/nxtsec.o ../lib/util.o ../lib/amopen.o ../lib/mexit.o ../lib/ligenb.o make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `rfree.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `rgroup.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' cpp -traditional -P -xassembler-with-cpp util.f > _util.f g95 -c -O0 -fno-second-underscore -o util.o _util.f make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `amopen.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `mexit.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' cpp -traditional -P -xassembler-with-cpp ligenb.f > _ligenb.f g95 -c -O0 -fno-second-underscore -o ligenb.o _ligenb.f make[2]: Leaving directory `/usr/local/amber9/src/lib' cd ../lib; make sys.a make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `sys.a' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' g95 -o anal.exe anafil.o analgr.o analys.o angl.o anglp.o bangle.o bond.o calhb.o chain.o clear.o compact.o dist.o egout.o ephi.o gaus80.o gauss.o getall.o getcmn.o hangl.o haxis.o hbond.o hbout.o locmem.o lsqstr.o matind.o mdbox.o mdread.o minv.o movecm.o nhbpar.o pdbout.o pdbrit.o percon.o prtri.o prtrin.o puck.o radgy.o rdparm.o rdrest.o resdis.o resnbn.o resnbp.o rms.o rmsfit.o rmsmov.o stell.o stogrd.o sumgrp.o tell.o tilang.o tilt.o tors.o traco.o vect.o volume.o xconst.o ../lib/rfree.o ../lib/rgroup.o ../lib/nxtsec.o ../lib/util.o ../lib/amopen.o ../lib/mexit.o ../lib/ligenb.o ../lib/sys.a /bin/mv anal.exe ../../exe/ make[1]: Leaving directory `/usr/local/amber9/src/anal' cd mm_pbsa; make install make[1]: Entering directory `/usr/local/amber9/src/mm_pbsa' cpp -traditional -P -xassembler-with-cpp make_crd_hg.f > _make_crd_hg.f g95 -c -O0 -fno-second-underscore -o make_crd_hg.o _make_crd_hg.f g95 -o make_crd_hg.exe make_crd_hg.o ../lib/amopen.o ../lib/mexit.o gcc -c -O2 -m32 -o molsurf.o molsurf.c gcc -O2 -m32 -o molsurf.exe molsurf.o -lm mv make_crd_hg.exe molsurf.exe ../../exe cp mm_pbsa.pl mm_pbsa_statistics.pl ../../exe make[1]: Leaving directory `/usr/local/amber9/src/mm_pbsa' cd pbsa; make install make[1]: Entering directory `/usr/local/amber9/src/pbsa' cpp -traditional -P -xassembler-with-cpp constants.f > _constants.f g95 -c -O0 -fno-second-underscore -ffree-form -o constants.o _constants.f cpp -traditional -P -xassembler-with-cpp decomp.f > _decomp.f g95 -c -O0 -fno-second-underscore -ffree-form -o decomp.o _decomp.f cpp -traditional -P -xassembler-with-cpp icosasurf.f > _icosasurf.f g95 -c -O3 -fno-second-underscore -ffree-form -o icosasurf.o _icosasurf.f cpp -traditional -P -xassembler-with-cpp egb.f > _egb.f g95 -c -O3 -fno-second-underscore -ffree-form -o egb.o _egb.f cpp -traditional -P -xassembler-with-cpp fastwt.f > _fastwt.f g95 -c -O3 -fno-second-underscore -ffree-form -o fastwt.o _fastwt.f cpp -traditional -P -xassembler-with-cpp pbsa.f > _pbsa.f g95 -c -O0 -fno-second-underscore -ffree-form -o pbsa.o _pbsa.f In file _pbsa.f:1027 call runmin(x,ix,ih,ipairs,x(lcrd),x(lforce),x(lvel), & 1 In file _pbsa.f:797 call runmin(x,ix,ih,ipairs,x(lcrd),x(lforce),x(lvel), & 2 Warning (155): Inconsistent types (INTEGER(4)/CHARACTER(1)) in actual argument lists at (1) and (2) In file _pbsa.f:815 call trajene(x,ix,ih,ipairs, ene,ok,r_stack,i_stack) 1 In file _pbsa.f:895 subroutine trajene(x,ix,ih,ipairs,ene,ok, r_stack,i_stack) 2 Warning (155): Inconsistent types (CHARACTER(1)/INTEGER(4)) in actual argument lists at (1) and (2) cpp -traditional -P -xassembler-with-cpp runmd.f > _runmd.f g95 -c -O3 -fno-second-underscore -ffree-form -o runmd.o _runmd.f cpp -traditional -P -xassembler-with-cpp runmin.f > _runmin.f g95 -c -O3 -fno-second-underscore -ffree-form -o runmin.o _runmin.f cpp -traditional -P -xassembler-with-cpp findmask.f > _findmask.f g95 -c -O0 -fno-second-underscore -ffree-form -o findmask.o _findmask.f cpp -traditional -P -xassembler-with-cpp mdread.f > _mdread.f g95 -c -O0 -fno-second-underscore -ffree-form -o mdread.o _mdread.f In file _mdread.f:1962 call cnstphread(ix(icpstinf),ix(icpresst),ix(icpptcnt), & 1 In file _mdread.f:804 subroutine cnstphread(stateinf,resstate,protcnt,trescnt,& 2 Warning (155): Inconsistent types (INTEGER(4)/TYPE(const_ph_info)) in actual argument lists at (1) and (2) cpp -traditional -P -xassembler-with-cpp rdparm.f > _rdparm.f g95 -c -O0 -fno-second-underscore -ffree-form -o rdparm.o _rdparm.f cpp -traditional -P -xassembler-with-cpp getcor.f > _getcor.f g95 -c -O0 -fno-second-underscore -ffree-form -o getcor.o _getcor.f cpp -traditional -P -xassembler-with-cpp sa_driver.f > _sa_driver.f g95 -c -O3 -fno-second-underscore -ffree-form -o sa_driver.o _sa_driver.f cpp -traditional -P -xassembler-with-cpp pb_force.f > _pb_force.f g95 -c -O3 -fno-second-underscore -ffree-form -o pb_force.o _pb_force.f cpp -traditional -P -xassembler-with-cpp np_force.f > _np_force.f g95 -c -O3 -fno-second-underscore -ffree-form -o np_force.o _np_force.f cpp -traditional -P -xassembler-with-cpp force.f > _force.f g95 -c -O3 -fno-second-underscore -ffree-form -o force.o _force.f cpp -traditional -P -xassembler-with-cpp is_init.f > _is_init.f g95 -c -O3 -fno-second-underscore -ffree-form -o is_init.o _is_init.f cpp -traditional -P -xassembler-with-cpp pb_exmol.f > _pb_exmol.f g95 -c -O3 -fno-second-underscore -ffree-form -o pb_exmol.o _pb_exmol.f cpp -traditional -P -xassembler-with-cpp pb_mpfrc.f > _pb_mpfrc.f g95 -c -O3 -fno-second-underscore -ffree-form -o pb_mpfrc.o _pb_mpfrc.f cpp -traditional -P -xassembler-with-cpp pb_direct.f > _pb_direct.f g95 -c -O3 -fno-second-underscore -ffree-form -o pb_direct.o _pb_direct.f cpp -traditional -P -xassembler-with-cpp pb_list.f > _pb_list.f g95 -c -O3 -fno-second-underscore -ffree-form -o pb_list.o _pb_list.f cpp -traditional -P -xassembler-with-cpp ene.f > _ene.f g95 -c -O3 -fno-second-underscore -ffree-form -o ene.o _ene.f cpp -traditional -P -xassembler-with-cpp printe.f > _printe.f g95 -c -O0 -fno-second-underscore -ffree-form -o printe.o _printe.f cpp -traditional -P -xassembler-with-cpp locmem.f > _locmem.f g95 -c -O0 -fno-second-underscore -ffree-form -o locmem.o _locmem.f cpp -traditional -P -xassembler-with-cpp echoin.f > _echoin.f g95 -c -O0 -fno-second-underscore -ffree-form -o echoin.o _echoin.f cpp -traditional -P -xassembler-with-cpp parallel.f > _parallel.f g95 -c -O0 -fno-second-underscore -ffree-form -o parallel.o _parallel.f cpp -traditional -P -xassembler-with-cpp shake.f > _shake.f g95 -c -O3 -fno-second-underscore -ffree-form -o shake.o _shake.f cpp -traditional -P -xassembler-with-cpp mdwrit.f > _mdwrit.f g95 -c -O0 -fno-second-underscore -ffree-form -o mdwrit.o _mdwrit.f cpp -traditional -P -xassembler-with-cpp minrit.f > _minrit.f g95 -c -O0 -fno-second-underscore -ffree-form -o minrit.o _minrit.f cpp -traditional -P -xassembler-with-cpp set.f > _set.f g95 -c -O0 -fno-second-underscore -ffree-form -o set.o _set.f cpp -traditional -P -xassembler-with-cpp setmm.f > _setmm.f g95 -c -O0 -fno-second-underscore -ffree-form -o setmm.o _setmm.f cpp -traditional -P -xassembler-with-cpp dynlib.f > _dynlib.f g95 -c -O0 -fno-second-underscore -ffree-form -o dynlib.o _dynlib.f cpp -traditional -P -xassembler-with-cpp mdfil.f > _mdfil.f g95 -c -O0 -fno-second-underscore -ffree-form -o mdfil.o _mdfil.f cpp -traditional -P -xassembler-with-cpp nmlsrc.f > _nmlsrc.f g95 -c -O0 -fno-second-underscore -ffree-form -o nmlsrc.o _nmlsrc.f cpp -traditional -P -xassembler-with-cpp rstack.f > _rstack.f g95 -c -O3 -fno-second-underscore -ffree-form -o rstack.o _rstack.f cpp -traditional -P -xassembler-with-cpp istack.f > _istack.f g95 -c -O3 -fno-second-underscore -ffree-form -o istack.o _istack.f cpp -traditional -P -xassembler-with-cpp rfree.f > _rfree.f g95 -c -O0 -fno-second-underscore -ffree-form -o rfree.o _rfree.f cpp -traditional -P -xassembler-with-cpp rgroup.f > _rgroup.f g95 -c -O0 -fno-second-underscore -ffree-form -o rgroup.o _rgroup.f cpp -traditional -P -xassembler-with-cpp random.f > _random.f g95 -c -O3 -fno-second-underscore -ffree-form -o random.o _random.f cpp -traditional -P -xassembler-with-cpp amopen.f > _amopen.f g95 -c -O0 -fno-second-underscore -ffree-form -o amopen.o _amopen.f cpp -traditional -P -xassembler-with-cpp debug.f > _debug.f g95 -c -O3 -fno-second-underscore -ffree-form -o debug.o _debug.f cpp -traditional -P -xassembler-with-cpp degcnt.f > _degcnt.f g95 -c -O0 -fno-second-underscore -ffree-form -o degcnt.o _degcnt.f cpp -traditional -P -xassembler-with-cpp mexit.f > _mexit.f g95 -c -O0 -fno-second-underscore -ffree-form -o mexit.o _mexit.f cpp -traditional -P -xassembler-with-cpp new_time.f > _new_time.f g95 -c -O3 -fno-second-underscore -ffree-form -o new_time.o _new_time.f cpp -traditional -P -xassembler-with-cpp matinv.f > _matinv.f g95 -c -O0 -fno-second-underscore -ffree-form -o matinv.o _matinv.f cpp -traditional -P -xassembler-with-cpp assert.f > _assert.f g95 -c -O0 -fno-second-underscore -ffree-form -o assert.o _assert.f cpp -traditional -P -xassembler-with-cpp veclib.f > _veclib.f g95 -c -O3 -fno-second-underscore -ffree-form -o veclib.o _veclib.f cpp -traditional -P -xassembler-with-cpp constantph.f > _constantph.f g95 -c -O3 -fno-second-underscore -ffree-form -o constantph.o _constantph.f cd ../lib; make sys.a make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `sys.a' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' cd ../lib; make nxtsec.o make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' cd ../lapack; make make[2]: Entering directory `/usr/local/amber9/src/lapack' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' ar rv lapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o xerbla.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o r - dsyev.o r - dsygv.o r - dlansy.o r - dsytrd.o r - dorgtr.o r - dsteqr.o r - dsterf.o r - dlascl.o r - dlamch.o r - xerbla.o r - ilaenv.o r - dlassq.o r - dsytd2.o r - dlatrd.o r - dorgql.o r - dorgqr.o r - dlasrt.o r - dlaset.o r - dlanst.o r - dlaev2.o r - dlasr.o r - dlapy2.o r - dlartg.o r - dlae2.o r - dorg2r.o r - dlarft.o r - dlarfb.o r - dorg2l.o r - dlarfg.o r - dlarf.o r - dspev.o r - dlansp.o r - dsptrd.o r - dopgtr.o r - dppsv.o r - dspsv.o r - dgeev.o r - dsptrs.o r - dsptrf.o r - dpptrs.o r - dpptrf.o r - dgebak.o r - dtrevc.o r - dlacpy.o r - dhseqr.o r - dorghr.o r - dgehrd.o r - dgebal.o r - dlange.o r - dlabad.o r - dlahqr.o r - dlarfx.o r - dlanhs.o r - dlaln2.o r - dgehd2.o r - dlahrd.o r - dlanv2.o r - dladiv.o r - dgerq2.o r - dorm2r.o r - dlarnv.o r - dgeqr2.o r - dlaruv.o r - dspevd.o r - dstedc.o r - dopmtr.o r - dlaed0.o r - dlaed1.o r - dlaed7.o r - dlaeda.o r - dlaed8.o r - dlaed9.o r - dlamrg.o r - dlaed2.o r - dlaed3.o r - dpotrf.o r - dsygst.o r - dpotf2.o r - dsygs2.o r - dlaebz.o r - dlagtf.o r - dlagts.o r - dormqr.o r - dormql.o r - dorm2l.o r - dlaed4.o r - dlaed5.o r - dlaed6.o r - ieeeck.o r - dsyevx.o r - dsyevd.o r - dstebz.o r - dstein.o r - dormtr.o r - zheev.o r - lsame.o r - zlanhe.o r - zlascl.o r - zhetrd.o r - zungtr.o r - zsteqr.o r - zlassq.o r - zlatrd.o r - zhetd2.o r - zungql.o r - zungqr.o r - zlasr.o r - zlaset.o r - zlacgv.o r - zlarfg.o r - zung2l.o r - zlarft.o r - zlarfb.o r - zung2r.o r - dlapy3.o r - zladiv.o r - zlarf.o ranlib lapack.a make[2]: Leaving directory `/usr/local/amber9/src/lapack' cd ../blas; make make[2]: Entering directory `/usr/local/amber9/src/blas' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' ar rv blas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o r - dasum.o r - daxpy.o r - dcabs1.o r - dcopy.o r - ddot.o r - dgbmv.o r - dgemm.o r - dgemv.o r - dger.o r - dnrm2.o r - drot.o r - drotg.o r - dsbmv.o r - dscal.o r - dspmv.o r - dspr.o r - dspr2.o r - dswap.o r - dsymm.o r - dsymv.o r - dsyr.o r - dsyr2.o r - dsyr2k.o r - dsyrk.o r - dtbmv.o r - dtbsv.o r - dtpmv.o r - dtpsv.o r - dtrmm.o r - dtrmv.o r - dtrsm.o r - dtrsv.o r - dummy.o r - dzasum.o r - dznrm2.o r - idamax.o r - isamax.o r - lsame.o r - scopy.o r - sswap.o r - sscal.o r - sasum.o r - snrm2.o r - sdot.o r - ssyr2k.o r - saxpy.o r - sgemv.o r - ssyr2.o r - ssymv.o r - sgemm.o r - strmm.o r - strmv.o r - sger.o r - zher2k.o r - zswap.o r - zgemv.o r - zhemv.o r - zscal.o r - zdotc.o r - zaxpy.o r - zher2.o r - zdscal.o r - ztrmv.o r - zcopy.o r - ztrmm.o r - zgemm.o r - zgerc.o ranlib blas.a make[2]: Leaving directory `/usr/local/amber9/src/blas' g95 -ffree-form -o pbsa.exe constants.o pbsa.o runmd.o runmin.o mdread.o rdparm.o getcor.o force.o is_init.o sa_driver.o np_force.o pb_force.o pb_exmol.o pb_mpfrc.o pb_direct.o pb_list.o egb.o ene.o decomp.o icosasurf.o findmask.o printe.o locmem.o fastwt.o echoin.o parallel.o shake.o mdwrit.o minrit.o set.o setmm.o dynlib.o mdfil.o nmlsrc.o rstack.o istack.o rfree.o rgroup.o random.o amopen.o debug.o degcnt.o mexit.o new_time.o matinv.o assert.o veclib.o constantph.o ../lib/sys.a ../lib/nxtsec.o \ ../lapack/lapack.a ../blas/blas.a /bin/mv pbsa.exe ../../exe make[1]: Leaving directory `/usr/local/amber9/src/pbsa' cd etc; make install make[1]: Entering directory `/usr/local/amber9/src/etc' cpp -traditional -P -xassembler-with-cpp ambpdb.f > _ambpdb.f g95 -c -O0 -fno-second-underscore -o ambpdb.o _ambpdb.f In file _ambpdb.f:103 1 C,C,C,ib,jb,nbond,chg,lastat,ter) 1 In file _ambpdb.f:204 1 X,IX,IH,ib,jb,nbond,chg,lastat,ter) 2 Warning (155): Inconsistent types (REAL(8)/REAL(4)) in actual argument lists at (1) and (2) cpp -traditional -P -xassembler-with-cpp forFIRSTtype.f > _forFIRSTtype.f g95 -c -O0 -fno-second-underscore -o forFIRSTtype.o _forFIRSTtype.f cpp -traditional -P -xassembler-with-cpp forFIRSTbond.f > _forFIRSTbond.f g95 -c -O0 -fno-second-underscore -o forFIRSTbond.o _forFIRSTbond.f cpp -traditional -P -xassembler-with-cpp forFIRSThbond.f > _forFIRSThbond.f g95 -c -O0 -fno-second-underscore -o forFIRSThbond.o _forFIRSThbond.f cpp -traditional -P -xassembler-with-cpp forFIRSTteth.f > _forFIRSTteth.f g95 -c -O0 -fno-second-underscore -o forFIRSTteth.o _forFIRSTteth.f cpp -traditional -P -xassembler-with-cpp forFIRSToutp.f > _forFIRSToutp.f g95 -c -O0 -fno-second-underscore -o forFIRSToutp.o _forFIRSToutp.f cd ../lib ; ./Makelist ../lib/amopen.o ../lib/mexit.o ../lib/nxtsec.o make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `amopen.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `mexit.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' g95 -o ambpdb.exe ambpdb.o forFIRSTtype.o forFIRSTbond.o forFIRSThbond.o forFIRSTteth.o forFIRSToutp.o ../lib/amopen.o ../lib/mexit.o ../lib/nxtsec.o cpp -traditional -P -xassembler-with-cpp nucgen.f > _nucgen.f g95 -c -O0 -fno-second-underscore -o nucgen.o _nucgen.f In file _nucgen.f:187 CALL SETSEQ(NRES,LBRES,IPMOL,JSEQ,KSEQ,inew) 1 In file _nucgen.f:542 SUBROUTINE SETSEQ(NRES,LBRES,IPMOL,JSEQ,KSEQ,inew) 2 Warning (155): Inconsistent types (CHARACTER(1)/INTEGER(4)) in actual argument lists at (1) and (2) cpp -traditional -P -xassembler-with-cpp ngfil.f > _ngfil.f g95 -c -O0 -fno-second-underscore -o ngfil.o _ngfil.f g95 -o nucgen.exe nucgen.o ngfil.o ../lib/amopen.o ../lib/mexit.o ../lib/nxtsec.o g++ -c -o elsize.o elsize.cc g++ -o elsize.exe elsize.o -lm /bin/mv ambpdb.exe nucgen.exe elsize.exe ../../exe/ /bin/cp calcpka.pl cpinutil.pl CPin.pm ../../exe make[1]: Leaving directory `/usr/local/amber9/src/etc' cd dcqtp; make install make[1]: Entering directory `/usr/local/amber9/src/dcqtp' cd mod; make make[2]: Entering directory `/usr/local/amber9/src/dcqtp/mod' cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/computeDimSizes.F90 > ../obj/computeDimSizes.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/computeDimSizes.o ../obj/computeDimSizes.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/energy.F90 > ../obj/energy.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/energy.o ../obj/energy.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/scf/doscf.F90 > ../obj/doscf.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/doscf.o ../obj/doscf.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/scf/fock.F90 > ../obj/fock.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/fock.o ../obj/fock.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/setup/command.F90 > ../obj/command.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/command.o ../obj/command.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/mem/allocateMxAtomVars.F90 > ../obj/allocateMxAtomVars.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/allocateMxAtomVars.o ../obj/allocateMxAtomVars.f cpp -traditional -P -xassembler-with-cpp -DHAS_LAPACK -I../src/include ../src/main/assert.F90 > ../obj/assert.f g95 -c -O3 -fno-second-underscore -ffree-form -I../../sander -o ../obj/assert.o ../obj/assert.f cd ../../blas; make make[3]: Entering directory `/usr/local/amber9/src/blas' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' ar rv blas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o r - dasum.o r - daxpy.o r - dcabs1.o r - dcopy.o r - ddot.o r - dgbmv.o r - dgemm.o r - dgemv.o r - dger.o r - dnrm2.o r - drot.o r - drotg.o r - dsbmv.o r - dscal.o r - dspmv.o r - dspr.o r - dspr2.o r - dswap.o r - dsymm.o r - dsymv.o r - dsyr.o r - dsyr2.o r - dsyr2k.o r - dsyrk.o r - dtbmv.o r - dtbsv.o r - dtpmv.o r - dtpsv.o r - dtrmm.o r - dtrmv.o r - dtrsm.o r - dtrsv.o r - dummy.o r - dzasum.o r - dznrm2.o r - idamax.o r - isamax.o r - lsame.o r - scopy.o r - sswap.o r - sscal.o r - sasum.o r - snrm2.o r - sdot.o r - ssyr2k.o r - saxpy.o r - sgemv.o r - ssyr2.o r - ssymv.o r - sgemm.o r - strmm.o r - strmv.o r - sger.o r - zher2k.o r - zswap.o r - zgemv.o r - zhemv.o r - zscal.o r - zdotc.o r - zaxpy.o r - zher2.o r - zdscal.o r - ztrmv.o r - zcopy.o r - ztrmm.o r - zgemm.o r - zgerc.o ranlib blas.a make[3]: Leaving directory `/usr/local/amber9/src/blas' cd ../../lapack; make make[3]: Entering directory `/usr/local/amber9/src/lapack' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' ar rv lapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o xerbla.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o r - dsyev.o r - dsygv.o r - dlansy.o r - dsytrd.o r - dorgtr.o r - dsteqr.o r - dsterf.o r - dlascl.o r - dlamch.o r - xerbla.o r - ilaenv.o r - dlassq.o r - dsytd2.o r - dlatrd.o r - dorgql.o r - dorgqr.o r - dlasrt.o r - dlaset.o r - dlanst.o r - dlaev2.o r - dlasr.o r - dlapy2.o r - dlartg.o r - dlae2.o r - dorg2r.o r - dlarft.o r - dlarfb.o r - dorg2l.o r - dlarfg.o r - dlarf.o r - dspev.o r - dlansp.o r - dsptrd.o r - dopgtr.o r - dppsv.o r - dspsv.o r - dgeev.o r - dsptrs.o r - dsptrf.o r - dpptrs.o r - dpptrf.o r - dgebak.o r - dtrevc.o r - dlacpy.o r - dhseqr.o r - dorghr.o r - dgehrd.o r - dgebal.o r - dlange.o r - dlabad.o r - dlahqr.o r - dlarfx.o r - dlanhs.o r - dlaln2.o r - dgehd2.o r - dlahrd.o r - dlanv2.o r - dladiv.o r - dgerq2.o r - dorm2r.o r - dlarnv.o r - dgeqr2.o r - dlaruv.o r - dspevd.o r - dstedc.o r - dopmtr.o r - dlaed0.o r - dlaed1.o r - dlaed7.o r - dlaeda.o r - dlaed8.o r - dlaed9.o r - dlamrg.o r - dlaed2.o r - dlaed3.o r - dpotrf.o r - dsygst.o r - dpotf2.o r - dsygs2.o r - dlaebz.o r - dlagtf.o r - dlagts.o r - dormqr.o r - dormql.o r - dorm2l.o r - dlaed4.o r - dlaed5.o r - dlaed6.o r - ieeeck.o r - dsyevx.o r - dsyevd.o r - dstebz.o r - dstein.o r - dormtr.o r - zheev.o r - lsame.o r - zlanhe.o r - zlascl.o r - zhetrd.o r - zungtr.o r - zsteqr.o r - zlassq.o r - zlatrd.o r - zhetd2.o r - zungql.o r - zungqr.o r - zlasr.o r - zlaset.o r - zlacgv.o r - zlarfg.o r - zung2l.o r - zlarft.o r - zlarfb.o r - zung2r.o r - dlapy3.o r - zladiv.o r - zlarf.o ranlib lapack.a make[3]: Leaving directory `/usr/local/amber9/src/lapack' g95 -o ../dcqtp.exe ../obj/chgRdKeys.o ../obj/ioRdKeys.o ../obj/ioRdTail.o ../obj/dcRdKeys.o ../obj/dcRdTail.o ../obj/mcRdKeys.o ../obj/minRdKeys.o ../obj/minRdTail.o ../obj/mmRdKeys.o ../obj/mmRdTail.o ../obj/nmrRdKeys.o ../obj/nmrRdTail.o ../obj/paramRdKeys.o ../obj/pbRdKeys.o ../obj/pmeRdKeys.o ../obj/scfRdKeys.o ../obj/tsRdKeys.o ../obj/atgrid.o ../obj/chkres.o ../obj/clustsub.o ../obj/cmbcore.o ../obj/cmbsub.o ../obj/doferm.o ../obj/esqr.o ../obj/esqrfdm.o ../obj/frmchk.o ../obj/fshift.o ../obj/gensub.o ../obj/gridafnc.o ../obj/gridrfnc.o ../obj/mixgrid.o ../obj/mkgrid.o ../obj/pgridafnc.o ../obj/pgridrfnc.o ../obj/resgrid.o ../obj/setncell.o ../obj/sproc.o ../obj/dc_module.o ../obj/freq.o ../obj/hsep.o ../obj/freqRdKeys.o ../obj/freqRdTail.o ../obj/freq_module.o ../obj/hamRdKeys.o ../obj/mndo_module.o ../obj/am1_module.o ../obj/pm3_module.o ../obj/mndod_module.o ../obj/pddgpm3_module.o ../obj/aijm.o ../obj/attrecurse.o ../obj/ddpo.o ../obj/diat.o ../obj/ecd.o ../obj/electricfield.o ../obj/erecursive.o ../obj/FmT.o ../obj/inighd.o ../obj/intdd1.o ../obj/intdd2.o ../obj/intdd3.o ../obj/intdd4.o ../obj/intdd5.o ../obj/intdd6.o ../obj/intdd.o ../obj/intdp.o ../obj/intds.o ../obj/intpd.o ../obj/intsd.o ../obj/localdd.o ../obj/localdp.o ../obj/localds.o ../obj/localpd.o ../obj/localsd.o ../obj/overlap.o ../obj/overlp.o ../obj/repuld.o ../obj/repul.o ../obj/sabt.o ../obj/setdorb.o ../obj/slow.o ../obj/slowi.o ../obj/intRdKeys.o ../obj/int_module.o ../obj/getversion.o ../obj/header.o ../obj/printen.o ../obj/printpar.o ../obj/printsub.o ../obj/rdcoord.o ../obj/rdbelly.o ../obj/rdbox.o ../obj/rdchemix.o ../obj/rdcluster.o ../obj/rdcomb.o ../obj/rddmx.o ../obj/rddos.o ../obj/rdgrid.o ../obj/rdgroup.o ../obj/rdguess.o ../obj/rdhess.o ../obj/rdint.o ../obj/rdkeys.o ../obj/rdlist.o ../obj/rdneighb.o ../obj/rdnext.o ../obj/rdnmr.o ../obj/rdnum.o ../obj/rdpdb.o ../obj/rdprtvec.o ../obj/rdrestraints.o ../obj/rdrst.o ../obj/rdsub.o ../obj/rdtail.o ../obj/rdvdw.o ../obj/rdword.o ../obj/rdxyz.o ../obj/wrtchg.o ../obj/wrtcoor.o ../obj/wrtdefaultkeys.o ../obj/wrtdiv.o ../obj/wrtdmx.o ../obj/wrtgrd.o ../obj/wrthss.o ../obj/wrtint.o ../obj/wrtpdb.o ../obj/wrtqma.o ../obj/wrtrep.o ../obj/wrtrst.o ../obj/wrttim.o ../obj/wrtvec.o ../obj/wrtvecsub.o ../obj/wrtxyz.o ../obj/block.o ../obj/denful.o ../obj/densub.o ../obj/densubfdm.o ../obj/divcon.o ../obj/edriver.o ../obj/global_module.o ../obj/param_module.o ../obj/math_module.o ../obj/pme_module.o ../obj/mm_module.o ../obj/nmr_module.o ../obj/mosub.o ../obj/mosubfdm.o ../obj/mosubfdmx.o ../obj/mainRdKeys.o ../obj/element_module.o ../obj/diag.o ../obj/diagp.o ../obj/fourier.o ../obj/lsolve.o ../obj/math.o ../obj/normalization.o ../obj/pdsyevd_driver.o ../obj/pdsyevx_driver.o ../obj/zheev.o ../obj/boxmove.o ../obj/boxstep.o ../obj/dovir.o ../obj/gcartmc.o ../obj/getrforc.o ../obj/mccopy.o ../obj/mcsetup.o ../obj/nptdriver.o ../obj/nvtdriver.o ../obj/resmove.o ../obj/resstep.o ../obj/rottr.o ../obj/setbox.o ../obj/submove.o ../obj/mc_module.o ../obj/allocatevars.o ../obj/deallocatevars.o ../obj/allocateDcVars.o ../obj/allocateIntVars.o ../obj/allocateMmVars.o ../obj/allocateFreqVars.o ../obj/allocateGuessVars.o ../obj/allocateMcVars.o ../obj/allocateMinVars.o ../obj/allocateNmrVars.o ../obj/allocateParamVars.o ../obj/allocatePmeVars.o ../obj/allocateScrfVars.o ../obj/allocateToolsVars.o ../obj/bsrch.o ../obj/diislb.o ../obj/diisub.o ../obj/geoopt.o ../obj/geoopt_module.o ../obj/getdir.o ../obj/lbfgs.o ../obj/linmin.o ../obj/min_module.o ../obj/getmm.o ../obj/getpep.o ../obj/ljglobals.o ../obj/ljint.o ../obj/mmroutines.o ../obj/restraint.o ../obj/mmDriver.o ../obj/balance.o ../obj/set_mpi_init.o ../obj/assignbasis.o ../obj/chshift.o ../obj/nmrdenful.o ../obj/nmrdensub.o ../obj/nmrdmx.o ../obj/nmresqr.o ../obj/oethccs.o ../obj/mndonmr_module.o ../obj/coppnt.o ../obj/error.o ../obj/loop.o ../obj/parop2.o ../obj/parop.o ../obj/recalc.o ../obj/tstpnt.o ../obj/chk_run_delphi.o ../obj/divpb.o ../obj/dpaccelerate.o ../obj/dpchargegrid.o ../obj/dpcollectsurfcharge.o ../obj/dpfinesurfprep.o ../obj/dpfinesurfacc.o ../obj/dpfinesurfrelax.o ../obj/dpgetmol.o ../obj/dpinit.o ../obj/dploop.o ../obj/dpmakegrid.o ../obj/dpmakesurface.o ../obj/dpmodule.o ../obj/dpsetepsilon.o ../obj/dpsetphi.o ../obj/nonpolar2.o ../obj/pbfock.o ../obj/pb_mds.o ../obj/pb_putpnt.o ../obj/pbsolver.o ../obj/pb_spt.o ../obj/pb_subdiv.o ../obj/pb_vector.o ../obj/pbDriver.o ../obj/pme_calcb.o ../obj/pme_calcq.o ../obj/pme_calcqmc.o ../obj/pme_calctheta.o ../obj/pme_derec.o ../obj/pme_derecmc.o ../obj/pme_direct.o ../obj/pme_directmc.o ../obj/pme_erec.o ../obj/pme_erecmc.o ../obj/pme_recip.o ../obj/pme_recipmc.o ../obj/pme_setup.o ../obj/pmeDriver.o ../obj/fmix.o ../obj/escf.o ../obj/initp.o ../obj/pmix.o ../obj/scf_module.o ../obj/assign.o ../obj/atmlist.o ../obj/glbpnt.o ../obj/initializeVars.o ../obj/intpr.o ../obj/setdef.o ../obj/setname2.o ../obj/setopt.o ../obj/setup.o ../obj/stripkeywd.o ../obj/atmchg.o ../obj/bcheck.o ../obj/dipole.o ../obj/homolumo.o ../obj/mkdos.o ../obj/push.o ../obj/pwdecomp.o ../obj/rotate.o ../obj/thermo.o ../obj/toolsRdKeys.o ../obj/toolsRdTail.o ../obj/tools_module.o ../obj/toolsDriver.o ../obj/rderror.o ../obj/error_module.o ../obj/geots.o ../obj/prjfc.o ../obj/septs.o ../obj/tsqna.o ../obj/tsrfo.o ../obj/ts_module.o ../obj/av.o ../obj/binloc_index.o ../obj/bleng.o ../obj/bndang.o ../obj/bpair.o ../obj/bsort.o ../obj/bspline.o ../obj/calcgeo.o ../obj/chkovlp.o ../obj/diffp_stat.o ../obj/dihedr.o ../obj/dograd.o ../obj/etimer.o ../obj/g2int.o ../obj/gcart.o ../obj/getcrd.o ../obj/getpar2.o ../obj/getpar.o ../obj/getxyz.o ../obj/icoord.o ../obj/ijpair.o ../obj/mcweeny.o ../obj/mvcrd.o ../obj/namemcf.o ../obj/oned.o ../obj/opnfil.o ../obj/out2stream.o ../obj/out2xml.o ../obj/pbcxyz.o ../obj/random.o ../obj/rcalc.o ../obj/save_module.o ../obj/setprtvec.o ../obj/setunit.o ../obj/strcatf.o ../obj/upcase.o ../obj/updatefname.o ../obj/wdjoin.o ../obj/whatis.o ../obj/zmake.o ../obj/computeDimSizes.o ../obj/energy.o ../obj/doscf.o ../obj/fock.o ../obj/command.o ../obj/allocateMxAtomVars.o ../obj/assert.o ../../lapack/lapack.a ../../blas/blas.a mv ../dcqtp.exe ../../../exe/divcon.exe make[2]: Leaving directory `/usr/local/amber9/src/dcqtp/mod' make[1]: Leaving directory `/usr/local/amber9/src/dcqtp' cd antechamber; make install make[1]: Entering directory `/usr/local/amber9/src/antechamber' gcc -c -O2 -m32 -o am1bcc.o am1bcc.c gcc -O2 -m32 am1bcc.o -lm -o am1bcc.exe gcc -c -O2 -m32 -o antechamber.o antechamber.c gcc -O2 -m32 antechamber.o -lm -o antechamber.exe gcc -c -O2 -m32 -o atomtype.o atomtype.c gcc -O2 -m32 atomtype.o -lm -o atomtype.exe g++ -c -o bondtype.o bondtype.C g++ bondtype.o -lm -o bondtype.exe gcc -c -O2 -m32 -o charmmgen.o charmmgen.c gcc -O2 -m32 charmmgen.o -lm -o charmmgen.exe gcc -c -O2 -m32 -o crdgrow.o crdgrow.c gcc -O2 -m32 crdgrow.o -lm -o crdgrow.exe gcc -c -O2 -m32 -o database.o database.c gcc -O2 -m32 database.o -lm -o database.exe gcc -c -O2 -m32 -o espgen.o espgen.c gcc -O2 -m32 espgen.o -o espgen.exe gcc -c -O2 -m32 -o parmcal.o parmcal.c gcc -O2 -m32 parmcal.o -lm -o parmcal.exe gcc -c -O2 -m32 -o parmchk.o parmchk.c gcc -O2 -m32 parmchk.o -lm -o parmchk.exe gcc -c -O2 -m32 -o prepgen.o prepgen.c gcc -O2 -m32 prepgen.o -lm -o prepgen.exe gcc -c -O2 -m32 -o respgen.o respgen.c gcc -O2 -m32 respgen.o -lm -o respgen.exe gcc -c -O2 -m32 -o top2mol2.o top2mol2.c gcc -O2 -m32 top2mol2.o -lm -o top2mol2.exe gcc -c -O2 -m32 -o translate.o translate.c gcc -O2 -m32 translate.o -lm -o translate.exe mv am1bcc.exe antechamber.exe atomtype.exe bondtype.exe charmmgen.exe crdgrow.exe database.exe espgen.exe parmcal.exe parmchk.exe prepgen.exe respgen.exe top2mol2.exe translate.exe ../../exe cp mopac.sh ../../exe make[1]: Leaving directory `/usr/local/amber9/src/antechamber' cd build_amoeba; make install make[1]: Entering directory `/usr/local/amber9/src/build_amoeba' cpp -traditional -P -xassembler-with-cpp amoeba_parm.f90 > amoeba_parm.f g95 -c -O3 -fno-second-underscore -ffree-form -o amoeba_parm.o amoeba_parm.f g95 -c -O3 -fno-second-underscore cspline.f g95 -o amoeba_parm.exe amoeba_parm.o cspline.o cpp -traditional -P -xassembler-with-cpp new_crd_to_dyn.f90 > new_crd_to_dyn.f g95 -c -O3 -fno-second-underscore -ffree-form -o new_crd_to_dyn.o new_crd_to_dyn.f cd ../lib; make nxtsec.o make[2]: Entering directory `/usr/local/amber9/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/usr/local/amber9/src/lib' g95 -o new_crd_to_dyn.exe new_crd_to_dyn.o ../lib/nxtsec.o cpp -traditional -P -xassembler-with-cpp new_to_old_crd.f90 > new_to_old_crd.f g95 -c -O3 -fno-second-underscore -ffree-form -o new_to_old_crd.o new_to_old_crd.f g95 -o new_to_old_crd.exe new_to_old_crd.o ../lib/nxtsec.o mv amoeba_parm.exe new_crd_to_dyn.exe new_to_old_crd.exe ../../exe make[1]: Leaving directory `/usr/local/amber9/src/build_amoeba' cp README_EXE ../exe/README cd leap; make install make[1]: Entering directory `/usr/local/amber9/src/leap' Compiling basic programs cd src/Wc; make make[2]: Entering directory `/usr/local/amber9/src/leap/src/Wc' Makefile:10: warning: overriding commands for target `.c.o' ../../../config.h:86: warning: ignoring old commands for target `.c.o' gcc -c -I/usr/X11R6/include -O2 -m32 -o MapAg.o MapAg.c gcc -c -I/usr/X11R6/include -O2 -m32 -o WcActCB.o WcActCB.c gcc -c -I/usr/X11R6/include -O2 -m32 -o WcConvert.o WcConvert.c gcc -c -I/usr/X11R6/include -O2 -m32 -o WcCreate.o WcCreate.c gcc -c -I/usr/X11R6/include -O2 -m32 -o WcInvoke.o WcInvoke.c gcc -c -I/usr/X11R6/include -O2 -m32 -o WcLateBind.o WcLateBind.c gcc -c -I/usr/X11R6/include -O2 -m32 -o WcLoadRes.o WcLoadRes.c gcc -c -I/usr/X11R6/include -O2 -m32 -o WcName.o WcName.c gcc -c -I/usr/X11R6/include -O2 -m32 -o WcReg.o WcReg.c gcc -c -I/usr/X11R6/include -O2 -m32 -o WcRegXt.o WcRegXt.c gcc -c -I/usr/X11R6/include -O2 -m32 -o WcSetValue.o WcSetValue.c gcc -c -I/usr/X11R6/include -O2 -m32 -o WcTemplate.o WcTemplate.c WcTemplate.c: In function `WcxDumpEntry': WcTemplate.c:285: warning: cast from pointer to integer of different size gcc -c -I/usr/X11R6/include -O2 -m32 -o WcWarn.o WcWarn.c gcc -c -I/usr/X11R6/include -O2 -m32 -o WcNameWidget.o WcNameWidget.c ar rv libWcLeap.a MapAg.o WcActCB.o WcConvert.o WcCreate.o WcInvoke.o WcLateBind.o WcLoadRes.o WcName.o WcReg.o WcRegXt.o WcSetValue.o WcTemplate.o WcWarn.o WcNameWidget.o ar: creating libWcLeap.a a - MapAg.o a - WcActCB.o a - WcConvert.o a - WcCreate.o a - WcInvoke.o a - WcLateBind.o a - WcLoadRes.o a - WcName.o a - WcReg.o a - WcRegXt.o a - WcSetValue.o a - WcTemplate.o a - WcWarn.o a - WcNameWidget.o ranlib libWcLeap.a make[2]: Leaving directory `/usr/local/amber9/src/leap/src/Wc' cd src/Xmu; make make[2]: Entering directory `/usr/local/amber9/src/leap/src/Xmu' Makefile:122: warning: overriding commands for target `.c.o' ../../../config.h:86: warning: ignoring old commands for target `.c.o' gcc -c -I/usr/X11R6/include -O2 -m32 -o AllCmap.o AllCmap.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Atoms.o Atoms.c gcc -c -I/usr/X11R6/include -O2 -m32 -o ClientWin.o ClientWin.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Clip.o Clip.c gcc -c -I/usr/X11R6/include -O2 -m32 -o CloseHook.o CloseHook.c gcc -c -I/usr/X11R6/include -O2 -m32 -o CmapAlloc.o CmapAlloc.c gcc -c -I/usr/X11R6/include -O2 -m32 -o CrCmap.o CrCmap.c gcc -c -I/usr/X11R6/include -O2 -m32 -o CrPixFBit.o CrPixFBit.c gcc -c -I/usr/X11R6/include -O2 -m32 -o CursorName.o CursorName.c gcc -c -I/usr/X11R6/include -O2 -m32 -o CvtCache.o CvtCache.c gcc -c -I/usr/X11R6/include -O2 -m32 -o CvtStdSel.o CvtStdSel.c gcc -c -I/usr/X11R6/include -O2 -m32 -o DefErrMsg.o DefErrMsg.c gcc -c -I/usr/X11R6/include -O2 -m32 -o DelCmap.o DelCmap.c gcc -c -I/usr/X11R6/include -O2 -m32 -o DisplayQue.o DisplayQue.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Distinct.o Distinct.c gcc -c -I/usr/X11R6/include -O2 -m32 -o DrawLogo.o DrawLogo.c gcc -c -I/usr/X11R6/include -O2 -m32 -o DrRndRect.o DrRndRect.c gcc -c -I/usr/X11R6/include -O2 -m32 -o EditresCom.o EditresCom.c gcc -c -I/usr/X11R6/include -O2 -m32 -o ExtAgent.o ExtAgent.c gcc -c -I/usr/X11R6/include -O2 -m32 -o FToCback.o FToCback.c gcc -c -I/usr/X11R6/include -O2 -m32 -o GetHost.o GetHost.c gcc -c -I/usr/X11R6/include -O2 -m32 -o GrayPixmap.o GrayPixmap.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Initer.o Initer.c gcc -c -I/usr/X11R6/include -O2 -m32 -o LocBitmap.o LocBitmap.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Lookup.o Lookup.c gcc -c -I/usr/X11R6/include -O2 -m32 -o LookupCmap.o LookupCmap.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Lower.o Lower.c gcc -c -I/usr/X11R6/include -O2 -m32 -o RdBitF.o RdBitF.c gcc -c -I/usr/X11R6/include -O2 -m32 -o ScrOfWin.o ScrOfWin.c gcc -c -I/usr/X11R6/include -O2 -m32 -o ShapeWidg.o ShapeWidg.c gcc -c -I/usr/X11R6/include -O2 -m32 -o StdCmap.o StdCmap.c gcc -c -I/usr/X11R6/include -O2 -m32 -o StrToBS.o StrToBS.c gcc -c -I/usr/X11R6/include -O2 -m32 -o StrToBmap.o StrToBmap.c gcc -c -I/usr/X11R6/include -O2 -m32 -o StrToCurs.o StrToCurs.c gcc -c -I/usr/X11R6/include -O2 -m32 -o StrToGrav.o StrToGrav.c gcc -c -I/usr/X11R6/include -O2 -m32 -o StrToJust.o StrToJust.c gcc -c -I/usr/X11R6/include -O2 -m32 -o StrToLong.o StrToLong.c gcc -c -I/usr/X11R6/include -O2 -m32 -o StrToOrnt.o StrToOrnt.c gcc -c -I/usr/X11R6/include -O2 -m32 -o StrToShap.o StrToShap.c gcc -c -I/usr/X11R6/include -O2 -m32 -o StrToWidg.o StrToWidg.c gcc -c -I/usr/X11R6/include -O2 -m32 -o UpdMapHint.o UpdMapHint.c gcc -c -I/usr/X11R6/include -O2 -m32 -o VisCmap.o VisCmap.c gcc -c -I/usr/X11R6/include -O2 -m32 -o WidgetNode.o WidgetNode.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Xct.o Xct.c ar rv libXmu.a AllCmap.o Atoms.o ClientWin.o Clip.o CloseHook.o CmapAlloc.o CrCmap.o CrPixFBit.o CursorName.o CvtCache.o CvtStdSel.o DefErrMsg.o DelCmap.o DisplayQue.o Distinct.o DrawLogo.o DrRndRect.o EditresCom.o ExtAgent.o FToCback.o GetHost.o GrayPixmap.o Initer.o LocBitmap.o Lookup.o LookupCmap.o Lower.o RdBitF.o ScrOfWin.o ShapeWidg.o StdCmap.o StrToBS.o StrToBmap.o StrToCurs.o StrToGrav.o StrToJust.o StrToLong.o StrToOrnt.o StrToShap.o StrToWidg.o UpdMapHint.o VisCmap.o WidgetNode.o Xct.o ar: creating libXmu.a a - AllCmap.o a - Atoms.o a - ClientWin.o a - Clip.o a - CloseHook.o a - CmapAlloc.o a - CrCmap.o a - CrPixFBit.o a - CursorName.o a - CvtCache.o a - CvtStdSel.o a - DefErrMsg.o a - DelCmap.o a - DisplayQue.o a - Distinct.o a - DrawLogo.o a - DrRndRect.o a - EditresCom.o a - ExtAgent.o a - FToCback.o a - GetHost.o a - GrayPixmap.o a - Initer.o a - LocBitmap.o a - Lookup.o a - LookupCmap.o a - Lower.o a - RdBitF.o a - ScrOfWin.o a - ShapeWidg.o a - StdCmap.o a - StrToBS.o a - StrToBmap.o a - StrToCurs.o a - StrToGrav.o a - StrToJust.o a - StrToLong.o a - StrToOrnt.o a - StrToShap.o a - StrToWidg.o a - UpdMapHint.o a - VisCmap.o a - WidgetNode.o a - Xct.o ranlib libXmu.a make[2]: Leaving directory `/usr/local/amber9/src/leap/src/Xmu' cd src/Xpm; make make[2]: Entering directory `/usr/local/amber9/src/leap/src/Xpm' Makefile:10: warning: overriding commands for target `.c.o' ../../../config.h:86: warning: ignoring old commands for target `.c.o' gcc -c -I/usr/X11R6/include -O2 -m32 -o data.o data.c gcc -c -I/usr/X11R6/include -O2 -m32 -o create.o create.c gcc -c -I/usr/X11R6/include -O2 -m32 -o misc.o misc.c gcc -c -I/usr/X11R6/include -O2 -m32 -o rgb.o rgb.c gcc -c -I/usr/X11R6/include -O2 -m32 -o scan.o scan.c gcc -c -I/usr/X11R6/include -O2 -m32 -o parse.o parse.c gcc -c -I/usr/X11R6/include -O2 -m32 -o hashtable.o hashtable.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmCrBufFrI.o XpmCrBufFrI.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmCrDataFrP.o XpmCrDataFrP.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmCrPFrBuf.o XpmCrPFrBuf.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmRdFToI.o XpmRdFToI.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmWrFFrI.o XpmWrFFrI.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmCrBufFrP.o XpmCrBufFrP.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmCrIFrBuf.o XpmCrIFrBuf.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmCrPFrData.o XpmCrPFrData.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmRdFToP.o XpmRdFToP.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmWrFFrP.o XpmWrFFrP.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmCrDataFrI.o XpmCrDataFrI.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmCrIFrData.o XpmCrIFrData.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmRdFToData.o XpmRdFToData.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XpmWrFFrData.o XpmWrFFrData.c ar rv libXpm.a data.o create.o misc.o rgb.o scan.o parse.o hashtable.o XpmCrBufFrI.o XpmCrDataFrP.o XpmCrPFrBuf.o XpmRdFToI.o XpmWrFFrI.o XpmCrBufFrP.o XpmCrIFrBuf.o XpmCrPFrData.o XpmRdFToP.o XpmWrFFrP.o XpmCrDataFrI.o XpmCrIFrData.o XpmRdFToData.o XpmWrFFrData.o ar: creating libXpm.a a - data.o a - create.o a - misc.o a - rgb.o a - scan.o a - parse.o a - hashtable.o a - XpmCrBufFrI.o a - XpmCrDataFrP.o a - XpmCrPFrBuf.o a - XpmRdFToI.o a - XpmWrFFrI.o a - XpmCrBufFrP.o a - XpmCrIFrBuf.o a - XpmCrPFrData.o a - XpmRdFToP.o a - XpmWrFFrP.o a - XpmCrDataFrI.o a - XpmCrIFrData.o a - XpmRdFToData.o a - XpmWrFFrData.o ranlib libXpm.a make[2]: Leaving directory `/usr/local/amber9/src/leap/src/Xpm' cd src/Xraw; make make[2]: Entering directory `/usr/local/amber9/src/leap/src/Xraw' Makefile:10: warning: overriding commands for target `.c.o' ../../../config.h:86: warning: ignoring old commands for target `.c.o' gcc -c -I/usr/X11R6/include -O2 -m32 -o 3d.o 3d.c 3d.c: In function `AllocShadowPixel': 3d.c:393: warning: comparison is always false due to limited range of data type 3d.c:393: warning: comparison is always false due to limited range of data type 3d.c:394: warning: comparison is always false due to limited range of data type 3d.c:394: warning: comparison is always false due to limited range of data type 3d.c:395: warning: comparison is always false due to limited range of data type 3d.c:395: warning: comparison is always false due to limited range of data type gcc -c -I/usr/X11R6/include -O2 -m32 -o AllWidgets.o AllWidgets.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Arrow.o Arrow.c gcc -c -I/usr/X11R6/include -O2 -m32 -o AsciiSink.o AsciiSink.c gcc -c -I/usr/X11R6/include -O2 -m32 -o AsciiSrc.o AsciiSrc.c gcc -c -I/usr/X11R6/include -O2 -m32 -o AsciiText.o AsciiText.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Box.o Box.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Clock.o Clock.c Clock.c:48: warning: conflicting types for built-in function 'round' gcc -c -I/usr/X11R6/include -O2 -m32 -o Command.o Command.c gcc -c -I/usr/X11R6/include -O2 -m32 -o color.o color.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Container.o Container.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Dialog.o Dialog.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Form.o Form.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Frame.o Frame.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Grip.o Grip.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Label.o Label.c gcc -c -I/usr/X11R6/include -O2 -m32 -o List.o List.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Logo.o Logo.c gcc -c -I/usr/X11R6/include -O2 -m32 -o MenuButton.o MenuButton.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Paned.o Paned.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Panner.o Panner.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Porthole.o Porthole.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Repeater.o Repeater.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Scrollbar.o Scrollbar.c gcc -c -I/usr/X11R6/include -O2 -m32 -o ScrolledTable.o ScrolledTable.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Separator.o Separator.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Simple.o Simple.c gcc -c -I/usr/X11R6/include -O2 -m32 -o SimpleMenu.o SimpleMenu.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Sme.o Sme.c gcc -c -I/usr/X11R6/include -O2 -m32 -o SmeBSB.o SmeBSB.c gcc -c -I/usr/X11R6/include -O2 -m32 -o SmeLine.o SmeLine.c gcc -c -I/usr/X11R6/include -O2 -m32 -o StripChart.o StripChart.c gcc -c -I/usr/X11R6/include -O2 -m32 -o table.o table.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Table2.o Table2.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Text.o Text.c gcc -c -I/usr/X11R6/include -O2 -m32 -o TextSink.o TextSink.c gcc -c -I/usr/X11R6/include -O2 -m32 -o TextSrc.o TextSrc.c gcc -c -I/usr/X11R6/include -O2 -m32 -o TextAction.o TextAction.c gcc -c -I/usr/X11R6/include -O2 -m32 -o TextPop.o TextPop.c gcc -c -I/usr/X11R6/include -O2 -m32 -o TextTr.o TextTr.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Toggle.o Toggle.c Toggle.c: In function `Notify': Toggle.c:422: warning: cast to pointer from integer of different size gcc -c -I/usr/X11R6/include -O2 -m32 -o Tree.o Tree.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Vendor.o Vendor.c gcc -c -I/usr/X11R6/include -O2 -m32 -o Viewport.o Viewport.c gcc -c -I/usr/X11R6/include -O2 -m32 -o XawInit.o XawInit.c ar rv libXaw.a 3d.o AllWidgets.o Arrow.o AsciiSink.o AsciiSrc.o AsciiText.o Box.o Clock.o Command.o color.o Container.o Dialog.o Form.o Frame.o Grip.o Label.o List.o Logo.o MenuButton.o Paned.o Panner.o Porthole.o Repeater.o Scrollbar.o ScrolledTable.o Separator.o Simple.o SimpleMenu.o Sme.o SmeBSB.o SmeLine.o StripChart.o table.o Table2.o Text.o TextSink.o TextSrc.o TextAction.o TextPop.o TextTr.o Toggle.o Tree.o Vendor.o Viewport.o XawInit.o ar: creating libXaw.a a - 3d.o a - AllWidgets.o a - Arrow.o a - AsciiSink.o a - AsciiSrc.o a - AsciiText.o a - Box.o a - Clock.o a - Command.o a - color.o a - Container.o a - Dialog.o a - Form.o a - Frame.o a - Grip.o a - Label.o a - List.o a - Logo.o a - MenuButton.o a - Paned.o a - Panner.o a - Porthole.o a - Repeater.o a - Scrollbar.o a - ScrolledTable.o a - Separator.o a - Simple.o a - SimpleMenu.o a - Sme.o a - SmeBSB.o a - SmeLine.o a - StripChart.o a - table.o a - Table2.o a - Text.o a - TextSink.o a - TextSrc.o a - TextAction.o a - TextPop.o a - TextTr.o a - Toggle.o a - Tree.o a - Vendor.o a - Viewport.o a - XawInit.o ranlib libXaw.a make[2]: Leaving directory `/usr/local/amber9/src/leap/src/Xraw' cd src/leap; make install make[2]: Entering directory `/usr/local/amber9/src/leap/src/leap' Makefile:4: warning: overriding commands for target `.c.o' ../../../config.h:86: warning: ignoring old commands for target `.c.o' gcc -c -I/usr/X11R6/include -O2 -m32 -o basics.o basics.c gcc -c -I/usr/X11R6/include -O2 -m32 -o sysdepend.o sysdepend.c gcc -c -I/usr/X11R6/include -O2 -m32 -o stringExtra.o stringExtra.c gcc -c -I/usr/X11R6/include -O2 -m32 -o varArray.o varArray.c gcc -c -I/usr/X11R6/include -O2 -m32 -o getline.o getline.c gcc -c -I/usr/X11R6/include -O2 -m32 -o avl.o avl.c gcc -c -I/usr/X11R6/include -O2 -m32 -o pdb_format.o pdb_format.c gcc -c -I/usr/X11R6/include -O2 -m32 -o pdb_read.o pdb_read.c gcc -c -I/usr/X11R6/include -O2 -m32 -o pdb_sprntf.o pdb_sprntf.c gcc -c -I/usr/X11R6/include -O2 -m32 -o pdb_sscanf.o pdb_sscanf.c gcc -c -I/usr/X11R6/include -O2 -m32 -o pdb_write.o pdb_write.c gcc -c -I/usr/X11R6/include -O2 -m32 -o vector.o vector.c gcc -c -I/usr/X11R6/include -O2 -m32 -o zMatrix.o zMatrix.c gcc -c -I/usr/X11R6/include -O2 -m32 -o sort.o sort.c gcc -c -I/usr/X11R6/include -O2 -m32 -o bag.o bag.c gcc -c -I/usr/X11R6/include -O2 -m32 -o hash.o hash.c gcc -c -I/usr/X11R6/include -O2 -m32 -o dictionary.o dictionary.c gcc -c -I/usr/X11R6/include -O2 -m32 -o database.o database.c gcc -c -I/usr/X11R6/include -O2 -m32 -o nVector.o nVector.c gcc -c -I/usr/X11R6/include -O2 -m32 -o ring.o ring.c gcc -c -I/usr/X11R6/include -O2 -m32 -o matrix.o matrix.c gcc -c -I/usr/X11R6/include -O2 -m32 -o fortran.o fortran.c gcc -c -I/usr/X11R6/include -O2 -m32 -o displayer.o displayer.c gcc -c -I/usr/X11R6/include -O2 -m32 -o assoc.o assoc.c gcc -c -I/usr/X11R6/include -O2 -m32 -o atom.o atom.c gcc -c -I/usr/X11R6/include -O2 -m32 -o byteArray.o byteArray.c gcc -c -I/usr/X11R6/include -O2 -m32 -o collection.o collection.c gcc -c -I/usr/X11R6/include -O2 -m32 -o container.o container.c gcc -c -I/usr/X11R6/include -O2 -m32 -o internal.o internal.c gcc -c -I/usr/X11R6/include -O2 -m32 -o list.o list.c gcc -c -I/usr/X11R6/include -O2 -m32 -o loop.o loop.c gcc -c -I/usr/X11R6/include -O2 -m32 -o molecule.o molecule.c gcc -c -I/usr/X11R6/include -O2 -m32 -o oDouble.o oDouble.c gcc -c -I/usr/X11R6/include -O2 -m32 -o oInteger.o oInteger.c gcc -c -I/usr/X11R6/include -O2 -m32 -o oString.o oString.c gcc -c -I/usr/X11R6/include -O2 -m32 -o objekt.o objekt.c gcc -c -I/usr/X11R6/include -O2 -m32 -o parmSet.o parmSet.c gcc -c -I/usr/X11R6/include -O2 -m32 -o residue.o residue.c residue.c: In function `ResidueConnect': residue.c:336: warning: passing arg 1 of `AtomBondTo' from incompatible pointer type residue.c:336: warning: passing arg 2 of `AtomBondTo' from incompatible pointer type residue.c: In function `ResidueMutate': residue.c:464: warning: passing arg 1 of `BuildFixInternals' from incompatible pointer type gcc -c -I/usr/X11R6/include -O2 -m32 -o unit.o unit.c gcc -c -I/usr/X11R6/include -O2 -m32 -o unitio.o unitio.c unitio.c: In function `zUnitIOSaveAmberParmFormat': unitio.c:4047: warning: passing arg 1 of `SortByInteger' from incompatible pointer type unitio.c:4047: warning: passing arg 4 of `SortByInteger' from incompatible pointer type unitio.c: In function `zUnitIOSaveAmberParmFormat_old': unitio.c:6055: warning: passing arg 1 of `SortByInteger' from incompatible pointer type unitio.c:6055: warning: passing arg 4 of `SortByInteger' from incompatible pointer type gcc -c -I/usr/X11R6/include -O2 -m32 -o tripos.o tripos.c gcc -c -I/usr/X11R6/include -O2 -m32 -o graphUtil.o graphUtil.c graphUtil.c: In function `GraphUtilFindAllSmallestRingsAndRingGroups': graphUtil.c:675: warning: passing arg 1 of `SortByInteger' from incompatible pointer type graphUtil.c:675: warning: passing arg 4 of `SortByInteger' from incompatible pointer type gcc -c -I/usr/X11R6/include -O2 -m32 -o select.o select.c gcc -c -I/usr/X11R6/include -O2 -m32 -o amber.o amber.c amber.c: In function `uAmberReadUnitFromPrep': amber.c:986: warning: passing arg 1 of `SortByInteger' from incompatible pointer type amber.c:986: warning: passing arg 4 of `SortByInteger' from incompatible pointer type gcc -c -I/usr/X11R6/include -O2 -m32 -o build.o build.c build.c: In function `bBuildFlipChiralityFor': build.c:1901: warning: passing arg 1 of `SortByInteger' from incompatible pointer type build.c:1901: warning: passing arg 4 of `SortByInteger' from incompatible pointer type build.c:1907: warning: passing arg 1 of `GraphUtilFindAllSmallestRings' from incompatible pointer type build.c: In function `BuildInternalsForSimpleRings': build.c:2185: warning: passing arg 1 of `GraphUtilFindAllSmallestRingsAndRingGroups' from incompatible pointer type gcc -c -I/usr/X11R6/include -O2 -m32 -o elements.o elements.c gcc -c -I/usr/X11R6/include -O2 -m32 -o library.o library.c gcc -c -I/usr/X11R6/include -O2 -m32 -o chirality.o chirality.c gcc -c -I/usr/X11R6/include -O2 -m32 -o minimizer.o minimizer.c gcc -c -I/usr/X11R6/include -O2 -m32 -o model.o model.c model.c: In function `zModelOrderAtoms': model.c:497: warning: passing arg 1 of `Sift' from incompatible pointer type gcc -c -I/usr/X11R6/include -O2 -m32 -o parmLib.o parmLib.c gcc -c -I/usr/X11R6/include -O2 -m32 -o pdbFile.o pdbFile.c pdbFile.c: In function `zPdbBuildCoordinatesForContainer': pdbFile.c:1088: warning: passing arg 1 of `BuildFixInternals' from incompatible pointer type pdbFile.c: In function `zPdbAddAtom': pdbFile.c:1207: warning: passing arg 1 of `BuildInternalsForContainer' from incompatible pointer type pdbFile.c: In function `writeTER': pdbFile.c:1761: warning: initialization from incompatible pointer type gcc -c -I/usr/X11R6/include -O2 -m32 -o tools.o tools.c tools.c: In function `iToolDistanceSearch': tools.c:1643: warning: passing arg 1 of `SortByDouble' from incompatible pointer type tools.c:1643: warning: passing arg 4 of `SortByDouble' from incompatible pointer type tools.c: In function `ToolOrientPrincipleAxisAlongCoordinateAxis': tools.c:1714: warning: passing arg 2 of `MathOpDiagonalize' from incompatible pointer type gcc -c -I/usr/X11R6/include -O2 -m32 -o variables.o variables.c yacc parser.y make[2]: yacc: Command not found make[2]: *** [parser.c] Error 127 make[2]: Leaving directory `/usr/local/amber9/src/leap/src/leap' make[1]: *** [install] Error 2 make[1]: Leaving directory `/usr/local/amber9/src/leap' make: *** [serial] Error 2