it seems fine, just telling you that you have 4 separate chains
with N and C termini. If that's not what you want, or if you want
to put capping groups on them, then you need to change it.
On 10/29/07, Francesco Pietra <chiendarret.yahoo.com> wrote:
> I had a lot of problems in fixing a large protein model. The last step was
> using leal (leaprc.ff99SB in Amber9). Heavy atoms were added where I had set
> TER records, res 111, 222, 333, and at res 444, besides 38 H/lone pairs. Both
> prmtop and inpcrd could be saved (and opened correctly with VMD or Chimera).
> The total charge is 24.000000. Not neutralized, not solvated, not tried to
> minimize yet.
>
> The last part of leap.log reads:
>
> (Residues lacking connect 0/ connect 1 -
> These don't have chain types marked:
> res total affected
> CTHR 4
> NSER 4
>
> Is that of concern or can I go on with these prmtop inpcrd?
>
> Thanks
> francesco pietra
>
> __________________________________________________
> Do You Yahoo!?
> Tired of spam? Yahoo! Mail has the best spam protection around
> http://mail.yahoo.com
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
>
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Oct 31 2007 - 06:07:33 PDT
