Dear all,
My protein has a heme, whose one Carbon atom is bonded to S of Cysteine. I am taking the HEME parameters as given in the AMBER contributed parameter set. However, for forming bond between the S of Cysteine and Carbon of HEME, I am not sure
which CYS unit to take - CYS or CYM (CYX is for S-S linkage, so I don't think I should use this).
I don't want to form any new unit of cysteine. Can I do it with any exisiting unit of Cysteine? Has anybody done this?
thanks,
Pradipta
Dr. Pradipta Bandyopadhyay
Centre for Computational Biologya and Bioinformatics
School of Information Technology
Jawaharlal Nehru University, New Delhi, INDIA
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Received on Sun Oct 28 2007 - 06:07:35 PDT
