AMBER: fragment parametrization tutorial?

From: Miguel Ortiz-Lombardía <>
Date: Sat, 29 Sep 2007 20:53:05 +0200

Dear amber users,

I want to carry out binding free energy calculations for a system where one
protein contains a non-standard residue, N(6)-acetyl-lysine. Since I haven't
been able to locate parameters for such residue, I'd like to try and
generate them myself. Being quite new to AMBER, I'd appreciate if someone
could point me to a tutorial for this kind of procedure within AMBER.

Thanking you in advance for your help,

Je suis de la mauvaise herbe,
Braves gens, braves gens,
Je pousse en liberté
Dans les jardins mal fréquentés!
Georges Brassens
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Received on Sun Sep 30 2007 - 06:07:55 PDT
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