On Wed, Sep 26, 2007, Wenyong Tong wrote:
>
> Could you please give some suggestions about the
> following results from NMR refinement? Please note
> that the final temperature did not get down.
You should examine the beginning of the input file, where the program prints
out the weight change information: be sure it seems to do what you want.
I don't see anything obviously wrong with the input, but I'm probably missing
something. But try some short(!) test cases to make sure annealing is doing
what you want -- something like 1,000 to 10,000 times shorter than what you
showed here.
>
> NMR restraints: Bond = 0.045 Angle = 0.000
> Torsion = 0.000
Note that even without cooling, you have essentially zero restraint
violations. I have no idea whether this means that your structures are really
good, or that your restraints are too weak, but it is something to look into.
...dac
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Sun Sep 30 2007 - 06:07:17 PDT