AMBER: MM_PBSA with complex plus Ion

From: <>
Date: Fri, 21 Sep 2007 16:26:58 +0200 (CEST)

I have a question about how to treat a complex with a metal ion.
That is a I have a complex of the form
A-i-B where A and B are protein and i a metal ion that is bonded to both A
and B.
I would like to extimate the stability and binding energy following the
tutorial exemples that is indeed very clear.

As I need prm top files for Ligand and receptor how to treat the ion?

Many thnks for any clue!


Dr Edoardo Saccenti
CERM Magnetic Resonance Center
University of Florence
Fiorgen Foundation
Via Luigi Sacconi n 6
50019 Sesto Fiorentino
(FI) Italy
Tel: +39 055 4574281
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Received on Sun Sep 23 2007 - 06:07:42 PDT
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