Re: AMBER: Tutorial protein-small-molecule-associates

From: Scott Brozell <>
Date: Fri, 14 Sep 2007 08:50:09 -0700


On Tue, 11 Sep 2007, Francesco Pietra wrote:

> Is any tutorial available as to build a complex between a protein and a small
> molecule? Such, as for example, steptavidin-biotin, where the tutorial starts
> from the complex.
> Specifically I am interested in joining gaff (from antechamber) to ff99SB.

I do not know of such an Amber tutorial.
See this for suggestions:
See also this thread for a continuation of these issues:


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Received on Sun Sep 16 2007 - 06:07:37 PDT
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