Re: AMBER: Missplaced TERs

From: David A. Case <>
Date: Mon, 10 Sep 2007 15:46:57 -0700

On Thu, Aug 16, 2007, Steve Seibold wrote:

> Sorry Dave. I was not clear. The previous files I sent you were the
> "output" files written by the module ambpdb of Sander with the misplaced
> TERs. My "input" pdb files with what I think are the correct placement
> of TERS are shown below.

Sorry to be so slow in replying. At tihs point, I think we need to have the
full pdb files you are using, plus the exact commands. There is probably a
bug somewhere, but we need to be able to reproduce this here to figure out
what is going on.

If the files are too big for the reflector, you can send them to me personally
(see for an address). I'll see what I can figure


The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Wed Sep 12 2007 - 06:07:34 PDT
Custom Search