AMBER: protocols for high pressure simulation

From: <>
Date: Tue, 28 Aug 2007 20:53:00 +0530 (IST)

Dear AMBER users.
I want to perform a simulation of protein under high pressure. So my
question here is that is there any standard protocol where pressure can be
raised to a higher level using AMBER force field OR some tricky way to
perform high pressure simulation ? Also whether the Berendsen coupling is
appropriate for high pressure simulation or not ? Can any body please help
me in this regard.

Thank you for your suggestions in advance.

B R Meher
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Received on Wed Aug 29 2007 - 06:07:38 PDT
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