AMBER: How to use AMBER Parameter Database ?

From: Qiang Zhong <>
Date: Wed, 22 Aug 2007 16:53:04 +0800

Dear Amber users:
          I have a protein complex which is consist of ADP ,Ca2+ and THP. I find
parameter file of these non-standard residue in
But I have some problem , THP is simple, I just need use command:loadOff
It is ok, but ADP and Ca2+ is not like THP, They are .prep format. I don't know
how to use it.
Could some body tell me
how to do? Thank you very much!

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Received on Sun Aug 26 2007 - 06:07:05 PDT
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