AMBER: How to use AMBER Parameter Database ?

From: Qiang Zhong <>
Date: Tue, 21 Aug 2007 20:36:46 +0800

Dear Amber users:
          I have a protein complex which is consist of ADP ,Ca2+ and THP. I find
parameter file of
these non-standard residue in I have some
problem ,
 THP is simple, I just need use command:loadOff amber_thp.lib. It is ok, but ADP
and Ca2+ is not like THP, They are .prep format. I don't know how to use it.
Could some body tell me
how to do? Thank you very much!

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Received on Wed Aug 22 2007 - 06:07:42 PDT
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