Dear Amber users:
I am preparing top file of protein simulation.when I execute tleap
command, I get
below information ,it is not like tutorial .
[t.localhost ~]$ tleap
-I: Adding /home/internet/Soft/Amber/amber9/dat/leap/prep to search path.
-I: Adding /home/internet/Soft/Amber/amber9/dat/leap/lib to search path.
-I: Adding /home/internet/Soft/Amber/amber9/dat/leap/parm to search path.
-I: Adding /home/internet/Soft/Amber/amber9/dat/leap/cmd to search path.
Welcome to LEaP!
(no leaprc in search path)
>
in tutorial file, normal result should be:
Welcome to LEaP!
Sourcing leaprc: /amber/dat/leap/cmd/leaprc
Log file: ./leap.log
Loading parameters: /amber/dat/leap/parm/parmME.dat
Loading library: /amber/dat/leap/lib/all_nucleic94.lib
Loading library: /amber/dat/leap/lib/all_aminoME.lib
Loading library: /amber/dat/leap/lib/all_aminoctME.lib
Loading library: /amber/dat/leap/lib/all_aminontME.lib
Loading library: /amber/dat/leap/lib/ions94.lib
Loading library: /amber/dat/leap/lib/water.lib
>
Could somebody tell me what the problem with it,and what shall I do?
Thank you very much!
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Received on Wed Aug 22 2007 - 06:07:34 PDT
