I am trying to set up a parallel implementation of Amber on my Linux
system. When I installed openmpi-1.0.2 i noted no error messages. The
"configure" script ran without problem. When I did the "make parallel"
step the process proceeded without error messages. The "MPI" versions of
sander are installed in the "exe" directory.
I have a problem when I try to run sander.MPI. This is what I see:
libibverbs: Fatal: Couldn't open sysfs class 'infiniband_verbs'
------------------------------------------------------------------------
----------------
[0,0,0]: OpenIB on host localhost.localdomain was unable to find
any HCS's. Anothet transport will be used instead, although this
may result in lower performance.
------------------------------------------------------------------------
----------------
Unit 6 Error on OPEN: mdin
[localhost.localdomain:23965] [0,0,0] ORTE_ERROR_LOG: Not found in
file base/pls_base_proxy.c at line 189
Can someone help me troubleshoot this problem?
Thanks!
John Beale
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Received on Wed Aug 22 2007 - 06:07:23 PDT
