AMBER: How to carry out drug-dna complex simulations

From: Anju Sharma <>
Date: Tue, 14 Aug 2007 14:20:04 +0530

Hello everybody
I want to carry out the simulation so of drug-dna complex. i.e. to carry out
simulations by placing the drug molecule at particular site in my dna
sequence (intercalating site). i have pdb files of both drug and dna
sequence. Now can anyone guide me how to place my drug at the desired
location in dna seq using Amber. If any tutorial similar to my problem is
available thn kindly provide me the link.
Anju Sharma
Project Fellow,
NIT, Hamirpur (H.P.)
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Received on Wed Aug 15 2007 - 06:07:42 PDT
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