Are you trying this command from a xterm in cygwin? or from the cygwin
bash prompt?
Gustavo.
On 8/9/07, Lili Peng <lilipeng.gmail.com> wrote:
> Dear all,
>
> Thanks all for your helpful comments. I've installed the tcsh package in
> Cygwin. However, I've encountered another problem. When I try to run xleap
> by typing "$AMBERHOME/exe/xleap -s -f
> $AMBERHOME/dat/leap/cmd/leaprc.ff99SB" I just end up
> getting the following message:
>
> "/cygdrive/h/amber9/exe/xaLeap: /cygdrive/h/amber9/exe/xaLeap: cannot
> execute binary file"
>
> I've also tried the following:
> $ xleap
> /cygdrive/h/amber9/exe/xaLeap: /cygdrive/h/amber9/exe/xaLeap: cannot execute
> binary file
>
> $ xaLeap
> ./xaLeap: ./xaLeap: cannot execute binary file
>
> I wondered whether it was a permissions problem, so I tried:
> $ ls -ll xaLeap
> -rwx------+ 1 Lili None 3467265 Mar 29 15:54 xaLeap
>
> ...Obviously I have read, write, and execute access, so it can't be a
> permissions issue..
>
> Does anyone have insights on the problem?
>
> Thanks,
> Lili
>
>
> On 8/8/07, Gustavo Seabra <gustavo.seabra.gmail.com > wrote:
> >
> > On 8/8/07, Lili Peng <lilipeng.gmail.com > wrote:
> > > I think I figured it out. I have to run:
> > >
> > > cd "$AMBERHOME"
> > > or
> > > ls "$AMBERHOME"
> > >
> > > cd or ls don't work without the quotes.
> >
> > That's weird, it works fine for me. Which shell are you using? The
> > default in cygwin in bash, which is the one I use, and just "cd
> > $AMBERHOME" works just fine.
> >
> > > Still, this doesn't solve the problem with running xleap, but I think
> that's
> > > a problem with csh. I didn't have it installed, so now I'm going back
> into
> > > the Cygwin setup file and installing the csh file.
> >
> > Well, that's another thing. This is unrelated to the error you
> > reported before, but yes, you need csh. In Cygwin, "csh" is actually a
> > symlink to "tcsh":
> >
> > $ which csh
> > /usr/bin/csh
> > $ ls -l /usr/bin/csh
> > lrwxrwxrwx 1 adm None 8 Jun 7 15:47 /usr/bin/csh -> tcsh.exe
> >
> > The problem is that tcsh is not installed by default. You need to run
> > setup.exe again and explicitly select it from the "shells" menu. The
> > link from csh is created automatically.
> >
> > Gustavo.
> >
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>
>
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Received on Sun Aug 12 2007 - 06:07:39 PDT
