cd tleap; make install make[1]: Entering directory `/home/jramirez/antechamber-1.27/tleap' icc -c -O2 -DSYSV basics.c icc -c -O2 -DSYSV sysdepend.c icc -c -O2 -DSYSV stringExtra.c icc -c -O2 -DSYSV varArray.c icc -c -O2 -DSYSV getline.c icc -c -O2 -DSYSV avl.c icc -c -O2 -DSYSV pdb_format.c icc -c -O2 -DSYSV pdb_read.c icc -c -O2 -DSYSV pdb_sprntf.c icc -c -O2 -DSYSV pdb_sscanf.c icc -c -O2 -DSYSV pdb_write.c icc -c -O2 -DSYSV vector.c icc -c -O2 -DSYSV zMatrix.c icc -c -O2 -DSYSV sort.c icc -c -O2 -DSYSV bag.c icc -c -O2 -DSYSV hash.c icc -c -O2 -DSYSV dictionary.c icc -c -O2 -DSYSV database.c database.c(164): warning #266: function declared implicitly sRemoveControlAndPadding( sOld, sTemp ); ^ database.c(403): warning #266: function declared implicitly sRemoveControlAndPadding( sRawLine, sLine ); ^ database.c(550): warning #266: function declared implicitly sRemoveLeadingSpaces( sLine ); ^ database.c(551): warning #266: function declared implicitly sRemoveFirstString( sLine, sHead ); ^ database.c(570): warning #266: function declared implicitly sRemoveLeadingSpaces( sLine ); ^ database.c(571): warning #266: function declared implicitly sRemoveFirstString( sLine, sHead ); ^ database.c(1618): warning #266: function declared implicitly sRemoveLeadingSpaces( sLine ); ^ database.c(1622): warning #266: function declared implicitly sRemoveFirstString( sLine, sName ); ^ database.c(1636): warning #266: function declared implicitly sRemoveControlAndPadding( sTemp, sType ); ^ database.c(1796): warning #266: function declared implicitly sRemoveLeadingSpaces( sLine ); ^ database.c(1800): warning #266: function declared implicitly sRemoveFirstString( sLine, sName ); ^ icc -c -O2 -DSYSV nVector.c icc -c -O2 -DSYSV ring.c icc -c -O2 -DSYSV matrix.c icc -c -O2 -DSYSV fortran.c fortran.c(277): warning #266: function declared implicitly sRemoveLeadingSpaces( SsInput ); ^ fortran.c(278): warning #266: function declared implicitly sRemoveFirstString( SsInput, sString ); ^ icc -c -O2 -DSYSV displayer.c icc -c -O2 -DSYSV assoc.c icc -c -O2 -DSYSV atom.c icc -c -O2 -DSYSV byteArray.c icc -c -O2 -DSYSV collection.c icc -c -O2 -DSYSV container.c container.c(181): warning #266: function declared implicitly UnitDestroy((UNIT *)cPContainer); ^ container.c(184): warning #266: function declared implicitly MoleculeDestroy((MOLECULE *)cPContainer); ^ container.c(187): warning #266: function declared implicitly ResidueDestroy((RESIDUE *)cPContainer); ^ icc -c -O2 -DSYSV internal.c icc -c -O2 -DSYSV list.c icc -c -O2 -DSYSV loop.c loop.c(325): warning #177: label "AINC0" was declared but never referenced AINC0: ^ loop.c(381): warning #177: label "TINC0" was declared but never referenced TINC0: ^ icc -c -O2 -DSYSV molecule.c icc -c -O2 -DSYSV oDouble.c icc -c -O2 -DSYSV oInteger.c icc -c -O2 -DSYSV oString.c icc -c -O2 -DSYSV objekt.c objekt.c(252): warning #181: argument is incompatible with corresponding format string conversion DFATAL(("Unknown object type=%c/%d addr 0x%x being destroyed!", ^ icc -c -O2 -DSYSV parmSet.c icc -c -O2 -DSYSV residue.c residue.c(334): warning #266: function declared implicitly AtomBondTo( rResA->aaConnect[iConnectA], ^ residue.c(407): warning #266: function declared implicitly BuildInternalsUsingFlags( &lAtoms, ^ residue.c(463): warning #266: function declared implicitly BuildFixInternals( rNew ); ^ residue.c(493): warning #266: function declared implicitly BuildExternalsUsingFlags( &lSpan, ^ residue.c(503): warning #266: function declared implicitly BuildDestroyInternals( &lAtoms ); ^ icc -c -O2 -DSYSV unit.c unit.c(199): warning #177: label "DONTIGNORE1" was declared but never referenced DONTIGNORE1: ^ icc -c -O2 -DSYSV unitio.c unitio.c(1431): warning #266: function declared implicitly if (zbUnitIgnoreAngle(sAtom1, sAtom2, sAtom3)) ^ unitio.c(1498): warning #266: function declared implicitly if (zbUnitIgnoreAngle(sAtom1, sAtom2, sAtom3)) ^ unitio.c(3526): warning #266: function declared implicitly MathOpConvertNonBondToAC(dEI, dRI, dEJ, dRJ, &dA, &dC); ^ unitio.c(4041): warning #266: function declared implicitly SortByInteger(PVAI(vaExcludedAtoms, int, iStart), ^ unitio.c(4107): warning #266: function declared implicitly FortranFile(fOut); ^ unitio.c(4122): warning #266: function declared implicitly FortranDebug("-1-"); ^ unitio.c(4124): warning #266: function declared implicitly FortranFormat(1, "%-80s"); ^ unitio.c(4129): warning #266: function declared implicitly FortranWriteString(sVersionHeader); ^ unitio.c(4141): warning #266: function declared implicitly /*NTOTAT*/ FortranWriteInt(iVarArrayElementCount(uUnit->vaAtoms)); ^ unitio.c(4350): warning #266: function declared implicitly FortranEndLine(); ^ unitio.c(4378): warning #266: function declared implicitly FortranWriteDouble(PVAI(uUnit->vaAtoms, SAVEATOMt, i)->dCharge * ^ unitio.c(4397): warning #266: function declared implicitly FortranWriteDouble(dMass); ^ unitio.c(4497): warning #266: function declared implicitly FortranWriteDouble(dKb); ^ unitio.c(4501): warning #266: function declared implicitly RESTRAINTLOOP(RESTRAINTBOND, dKx, i + 1); ^ unitio.c(4515): warning #266: function declared implicitly FortranWriteDouble(dR0); ^ unitio.c(4519): warning #266: function declared implicitly RESTRAINTLOOP(RESTRAINTBOND, dX0, i + 1); ^ unitio.c(4533): warning #266: function declared implicitly FortranWriteDouble(dKt); ^ unitio.c(4537): warning #266: function declared implicitly RESTRAINTLOOP(RESTRAINTANGLE, dKx, i + 1); ^ unitio.c(4551): warning #266: function declared implicitly FortranWriteDouble(dT0); ^ unitio.c(4555): warning #266: function declared implicitly RESTRAINTLOOP(RESTRAINTANGLE, dX0, i + 1); ^ unitio.c(4574): warning #266: function declared implicitly FortranWriteDouble(dKp); ^ unitio.c(4581): warning #266: function declared implicitly FortranWriteDouble(dKp); ^ unitio.c(4585): warning #266: function declared implicitly RESTRAINTLOOP(RESTRAINTTORSION, dKx, i + 1); ^ unitio.c(4600): warning #266: function declared implicitly FortranWriteDouble(dTemp); ^ unitio.c(4606): warning #266: function declared implicitly FortranWriteDouble(dTemp); ^ unitio.c(4610): warning #266: function declared implicitly RESTRAINTLOOP(RESTRAINTTORSION, dX0, i + 1); ^ unitio.c(4624): warning #266: function declared implicitly FortranWriteDouble(dP0); ^ unitio.c(4629): warning #266: function declared implicitly FortranWriteDouble(dP0); ^ unitio.c(4633): warning #266: function declared implicitly RESTRAINTLOOP(RESTRAINTTORSION, dN, i + 1); ^ unitio.c(4645): warning #266: function declared implicitly FortranWriteDouble(0.0); ^ unitio.c(4658): warning #266: function declared implicitly FortranWriteDouble(PVAI(vaNBParameters, NONBONDACt, i)->dA); ^ unitio.c(4671): warning #266: function declared implicitly FortranWriteDouble(PVAI(vaNBParameters, NONBONDACt, i)->dC); ^ unitio.c(4975): warning #266: function declared implicitly FortranWriteDouble(dC); ^ unitio.c(4989): warning #266: function declared implicitly FortranWriteDouble(dD); ^ unitio.c(5001): warning #266: function declared implicitly FortranWriteDouble(0.0); ^ unitio.c(5126): warning #266: function declared implicitly FortranWriteDouble(dUnitBeta(uUnit) / DEGTORAD); ^ unitio.c(5152): warning #266: function declared implicitly FortranWriteDouble(dR); ^ unitio.c(5241): warning #266: function declared implicitly FortranWriteDouble(dGBrad); ^ unitio.c(5295): warning #266: function declared implicitly FortranWriteDouble(dGBscreen); ^ unitio.c(5658): warning #266: function declared implicitly FortranWriteDouble(0.0); ^ unitio.c(5702): warning #266: function declared implicitly FortranWriteDouble(ELECTRONTOKCAL * ^ unitio.c(5705): warning #266: function declared implicitly FortranWriteDouble(ELECTRONTOKCAL * ^ unitio.c(5708): warning #266: function declared implicitly FortranWriteDouble(ELECTRONTOKCAL * ^ unitio.c(5739): warning #266: function declared implicitly FortranWriteDouble(dPolar); ^ unitio.c(5772): warning #266: function declared implicitly FortranWriteDouble(dPolar); ^ unitio.c(5790): warning #266: function declared implicitly FortranWriteDouble(PVAI(vaNBParameters, NONBONDACt, i)->dA14); ^ unitio.c(5800): warning #266: function declared implicitly FortranWriteDouble(PVAI(vaNBParameters, NONBONDACt, i)->dC14); ^ unitio.c(5811): warning #266: function declared implicitly FortranWriteDouble(dTkub); ^ unitio.c(5822): warning #266: function declared implicitly FortranWriteDouble(dRkub); ^ unitio.c(5858): warning #266: function declared implicitly FortranWriteDouble(dVX(&vPos) + dX2); ^ unitio.c(5863): warning #266: function declared implicitly FortranWriteDouble(dX); ^ unitio.c(5873): warning #266: function declared implicitly FortranWriteDouble(dVX(&vPos)); ^ unitio.c(6029): warning #266: function declared implicitly SortByInteger( PVAI( vaExcludedAtoms, int, iStart ), ^ unitio.c(6096): warning #266: function declared implicitly FortranFile( fOut ); ^ unitio.c(6111): warning #266: function declared implicitly FortranDebug( "-1-" ); ^ unitio.c(6113): warning #266: function declared implicitly FortranFormat( 1, "%-80s" ); ^ unitio.c(6114): warning #266: function declared implicitly FortranWriteString( sContainerName(uUnit) ); ^ unitio.c(6122): warning #266: function declared implicitly FortranWriteInt( iVarArrayElementCount( uUnit->vaAtoms ) ); ^ unitio.c(6343): warning #266: function declared implicitly FortranEndLine(); ^ unitio.c(6364): warning #266: function declared implicitly FortranWriteDouble( PVAI( uUnit->vaAtoms, SAVEATOMt, i )->dCharge * ^ unitio.c(6380): warning #266: function declared implicitly FortranWriteDouble( dMass ); ^ unitio.c(6448): warning #266: function declared implicitly FortranWriteDouble( dKb ); ^ unitio.c(6452): warning #266: function declared implicitly RESTRAINTLOOP( RESTRAINTBOND, dKx, i+1 ); ^ unitio.c(6462): warning #266: function declared implicitly FortranWriteDouble( dR0 ); ^ unitio.c(6466): warning #266: function declared implicitly RESTRAINTLOOP( RESTRAINTBOND, dX0, i+1 ); ^ unitio.c(6477): warning #266: function declared implicitly FortranWriteDouble( dKt ); ^ unitio.c(6481): warning #266: function declared implicitly RESTRAINTLOOP( RESTRAINTANGLE, dKx, i+1 ); ^ unitio.c(6492): warning #266: function declared implicitly FortranWriteDouble( dT0 ); ^ unitio.c(6496): warning #266: function declared implicitly RESTRAINTLOOP( RESTRAINTANGLE, dX0, i+1 ); ^ unitio.c(6514): warning #266: function declared implicitly FortranWriteDouble( dKp ); ^ unitio.c(6523): warning #266: function declared implicitly FortranWriteDouble( dKp ); ^ unitio.c(6527): warning #266: function declared implicitly RESTRAINTLOOP( RESTRAINTTORSION, dKx, i+1 ); ^ unitio.c(6540): warning #266: function declared implicitly FortranWriteDouble( dTemp ); ^ unitio.c(6547): warning #266: function declared implicitly FortranWriteDouble( dTemp ); ^ unitio.c(6551): warning #266: function declared implicitly RESTRAINTLOOP( RESTRAINTTORSION, dX0, i+1 ); ^ unitio.c(6563): warning #266: function declared implicitly FortranWriteDouble( dP0 ); ^ unitio.c(6569): warning #266: function declared implicitly FortranWriteDouble( dP0 ); ^ unitio.c(6573): warning #266: function declared implicitly RESTRAINTLOOP( RESTRAINTTORSION, dN, i+1 ); ^ unitio.c(6582): warning #266: function declared implicitly FortranWriteDouble( 0.0 ); ^ unitio.c(6592): warning #266: function declared implicitly FortranWriteDouble( PVAI( vaNBParameters, NONBONDACt, i )->dA ); ^ unitio.c(6602): warning #266: function declared implicitly FortranWriteDouble( PVAI( vaNBParameters, NONBONDACt, i )->dC ); ^ unitio.c(6864): warning #266: function declared implicitly FortranWriteDouble( dC ); ^ unitio.c(6874): warning #266: function declared implicitly FortranWriteDouble( dD ); ^ unitio.c(6883): warning #266: function declared implicitly FortranWriteDouble( 0.0 ); ^ unitio.c(6987): warning #266: function declared implicitly FortranWriteDouble( dUnitBeta(uUnit)/DEGTORAD ); ^ unitio.c(7008): warning #266: function declared implicitly FortranWriteDouble( dR ); ^ unitio.c(7314): warning #266: function declared implicitly FortranWriteDouble( 0.0 ); ^ unitio.c(7347): warning #266: function declared implicitly FortranWriteDouble( ELECTRONTOKCAL * ^ unitio.c(7350): warning #266: function declared implicitly FortranWriteDouble( ELECTRONTOKCAL * ^ unitio.c(7376): warning #266: function declared implicitly FortranWriteDouble( dPolar ); ^ unitio.c(7403): warning #266: function declared implicitly FortranWriteDouble( dPolar ); ^ unitio.c(7421): warning #266: function declared implicitly FortranWriteDouble( PVAI( vaNBParameters, NONBONDACt, i )->dA14 ); ^ unitio.c(7431): warning #266: function declared implicitly FortranWriteDouble( PVAI( vaNBParameters, NONBONDACt, i )->dC14 ); ^ unitio.c(7442): warning #266: function declared implicitly FortranWriteDouble( dTkub ); ^ unitio.c(7453): warning #266: function declared implicitly FortranWriteDouble( dRkub ); ^ unitio.c(7489): warning #266: function declared implicitly FortranWriteDouble( dVX(&vPos) + dX2 ); ^ unitio.c(7494): warning #266: function declared implicitly FortranWriteDouble( dX ); ^ unitio.c(7504): warning #266: function declared implicitly FortranWriteDouble( dVX(&vPos) ); ^ icc -c -O2 -DSYSV graphUtil.c graphUtil.c(95): warning #1011: missing return statement at end of non-void function "bGraphUtilFindShortestPath" } ^ graphUtil.c(669): warning #266: function declared implicitly SortByInteger( PVAI(vaRingSort,RINGSORTt,0), ^ icc -c -O2 -DSYSV select.c select.c(85): warning #266: function declared implicitly GraphUtilFindAllSmallestRings( uUnit ); ^ select.c(104): warning #266: function declared implicitly BuildDestroyInternals(&lAtoms); ^ select.c(249): warning #266: function declared implicitly BuildRelaxInFramework( uUnit, mMinimizer ); ^ icc -c -O2 -DSYSV amber.c amber.c(981): warning #266: function declared implicitly SortByInteger( Pil, ^ amber.c(1141): warning #266: function declared implicitly ZMatrixNothing( &vPos ); ^ amber.c(1144): warning #266: function declared implicitly ZMatrixBond( &vPos, &vPos1, dBond ); ^ amber.c(1148): warning #266: function declared implicitly ZMatrixBondAngle( &vPos, &vPos1, &vPos2, dBond, dAngle ); ^ amber.c(1153): warning #266: function declared implicitly ZMatrixBondAngleTorsion( &vPos, &vPos1, &vPos2, &vPos3, ^ amber.c(1190): warning #266: function declared implicitly AtomBondTo( aAtom, aAtom2 ); ^ amber.c(1269): warning #266: function declared implicitly AtomBondTo( aAtom, aAtom2 ); ^ icc -c -O2 -DSYSV build.c build.c(1899): warning #266: function declared implicitly SortByInteger( caaCount, iAtomCoordination(aFlip), sizeof(COUNTATOMSt), ^ build.c(1906): warning #266: function declared implicitly GraphUtilFindAllSmallestRings( cContainer ); ^ build.c(2184): warning #266: function declared implicitly GraphUtilFindAllSmallestRingsAndRingGroups( cContainer, &vaRingGroups ); ^ build.c(2195): warning #266: function declared implicitly GraphUtilDestroyRingGroupVarArray(&vaRingGroups); ^ icc -c -O2 -DSYSV elements.c icc -c -O2 -DSYSV library.c icc -c -O2 -DSYSV chirality.c icc -c -O2 -DSYSV minimizer.c icc -c -O2 -DSYSV model.c model.c(492): warning #266: function declared implicitly Sift( maaXBonds, sizeof(maaXBonds[0]), iX, ^ model.c(634): warning #266: function declared implicitly ZMatrixBondAngleTorsion( &(maPNew->vPos), ^ model.c(1154): warning #266: function declared implicitly AtomBondTo( aAtom, aNew ); ^ icc -c -O2 -DSYSV parmLib.c icc -c -O2 -DSYSV pdbFile.c pdbFile.c(1087): warning #266: function declared implicitly BuildFixInternals( cCont ); ^ pdbFile.c(1115): warning #266: function declared implicitly BuildExternalsUsingFlags( &lSpan, ^ pdbFile.c(1128): warning #266: function declared implicitly BuildExternalsUsingFlags( &lSpan, ^ pdbFile.c(1141): warning #266: function declared implicitly BuildDestroyInternals( &lAtoms ); ^ pdbFile.c(1206): warning #266: function declared implicitly BuildInternalsForContainer( uNew, 0, ATOMPOSITIONKNOWN ); ^ pdbFile.c(1233): warning #266: function declared implicitly BuildInternalsBetweenUnitsUsingFlags( prPPdb->uUnit, uNew, 0, 0 ); ^ pdbFile.c(1373): warning #266: function declared implicitly AtomBondTo( aA, aB ); ^ pdbFile.c(1760): warning #144: a value of type "OBJEKT" cannot be used to initialize an entity of type "ATOM" ATOM aAtom = rRes->aaConnect[CONNECT1]; ^ pdbFile.c(1782): warning #266: function declared implicitly iResidueCount = zUnitIOAmberOrderResidues( uUnit ); ^ icc -c -O2 -DSYSV tools.c tools.c(1252): warning #266: function declared implicitly TMem(); ^ tools.c(1641): warning #266: function declared implicitly SortByDouble( Ppair, iPairs, sizeof(PAIRt), &Ppair->dDist, TRUE ); ^ tools.c(1705): warning #266: function declared implicitly MathOpMomentOfInertia( uUnit, mMoment ); ^ tools.c(1712): warning #266: function declared implicitly MathOpDiagonalize( mMoment, &vEigenvalues, mDiagonalize, &iSteps ); ^ icc -c -O2 -DSYSV variables.c yacc parser.y conflicts: 6 shift/reduce (The warning 'conflicts: 6 shift/reduce' is normal) rm -f parser.c mv y.tab.c parser.c icc -c -O2 -DSYSV parser.c y.tab.c(1060): warning #266: function declared implicitly yychar = YYLEX; ^ parser.y(221): warning #117: non-void function "yyparse" should return a value return; ^ y.tab.c(1408): warning #266: function declared implicitly yyerror ("syntax error"); ^ y.tab.c(1523): warning #266: function declared implicitly yyerror ("parser stack overflow"); ^ parser.y(418): warning #1011: missing return statement at end of non-void function "yyerror" } ^ parser.y(461): warning #266: function declared implicitly bGotBlock = bBlockAddChar( GbExecute, c ); ^ parser.y(472): warning #266: function declared implicitly bGotBlock = bBlockAddChar( GbExecute, '\n' ); ^ parser.y(1107): warning #266: function declared implicitly HelpInitialize(); ^ parser.y(1241): warning #266: function declared implicitly HelpShutdown(); ^ icc -c -O2 -DSYSV help.c help.c(87): warning #266: function declared implicitly HTInit(); ^ icc -c -O2 -DSYSV utilMakeHelp.c icc -o utilMakeHelp basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o utilMakeHelp.o -lm ./utilMakeHelp helptext.text helptext.c icc -c -O2 -DSYSV helptext.c icc -c -O2 -DSYSV octree.c icc -c -O2 -DSYSV commands.c commands.c(664): warning #266: function declared implicitly BuildInternalsForContainer( (CONTAINER) uSecond, ^ commands.c(670): warning #266: function declared implicitly BuildInternalsBetweenUnitsUsingFlags( uFirst, uSecond, ^ commands.c(680): warning #266: function declared implicitly BuildExternalsUsingFlags( &lAtoms, ATOMNEEDSBUILD, 0, ^ commands.c(691): warning #266: function declared implicitly BuildDestroyInternals( &lAtoms ); ^ commands.c(1325): warning #266: function declared implicitly ZMatrixNothing( &vAtom2 ); ^ commands.c(1327): warning #266: function declared implicitly ZMatrixBond( &vNew, &vAtom2, dODouble(oaElements[2]) ); ^ commands.c(1336): warning #266: function declared implicitly ZMatrixBondAngle( &vNew, &vAtom2, &vAtom3, ^ commands.c(1348): warning #266: function declared implicitly ZMatrixBondAngleTorsion( &vNew, &vAtom2, &vAtom3, &vAtom4, ^ commands.c(1361): warning #266: function declared implicitly ZMatrixBondTwoAnglesOrientation( &vNew, ^ commands.c(2838): warning #266: function declared implicitly ToolSetUnitBoxByCenters( uUnit ); ^ commands.c(3119): warning #266: function declared implicitly UnitIOSaveAmberPrep( uUnit, fOut ); ^ commands.c(3752): warning #266: function declared implicitly BuildInternalsUsingFlags( &lAtoms, 0, 0, ^ commands.c(3814): warning #266: function declared implicitly bBuildChangeInternalBond( rResModify, ^ commands.c(3837): warning #266: function declared implicitly bBuildChangeInternalAngle( rResModify, ^ commands.c(3862): warning #266: function declared implicitly bBuildChangeInternalTorsion( rResModify, ^ commands.c(3882): warning #266: function declared implicitly BuildExternalsUsingFlags( &lSpanning, 0, 0, ^ commands.c(3890): warning #266: function declared implicitly BuildDestroyInternals( &lAtoms ); ^ commands.c(5934): warning #266: function declared implicitly VarArrayDelete( GvaAlias, i ); ^ icc -c -O2 -DSYSV mathop.c icc -c -O2 -DSYSV block.c icc -c -O2 -DSYSV restraint.c icc -c -O2 -DSYSV hybrid.c icc -c -O2 -DSYSV tripos.c icc -c -O2 -DSYSV tLeap.c tLeap.c(154): warning #266: function declared implicitly ParseArguments( argc, argv ); ^ tLeap.c(156): warning #266: function declared implicitly ParseInit( &rResult ); ^ tLeap.c(173): warning #266: function declared implicitly (void) bBlockAddChar( bCmd, *cp ); ^ tLeap.c(175): warning #266: function declared implicitly if ( bBlockAddChar( bCmd, '\n' ) ) { ^ tLeap.c(176): warning #266: function declared implicitly ParseBlock( bCmd, &rResult ); ^ tLeap.c(183): warning #266: function declared implicitly ParseShutdown(); ^ icc -o teLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o tripos.o tLeap.o -lm cp tleap ../exe mv teLeap ../exe make[1]: Leaving directory `/home/jramirez/antechamber-1.27/tleap' cd antechamber; make install make[1]: Entering directory `/home/jramirez/antechamber-1.27/antechamber' icc -O2 -c -o am1bcc.o am1bcc.c icc -O2 am1bcc.o -lm -o am1bcc icc -O2 -c -o antechamber.o antechamber.c mol2.c(64): warning #181: argument is incompatible with corresponding format string conversion sscanf(line, "%ld%ld", &read_atomnum, &read_bondnum); ^ mol2.c(64): warning #181: argument is incompatible with corresponding format string conversion sscanf(line, "%ld%ld", &read_atomnum, &read_bondnum); ^ rst.c(24): warning #181: argument is incompatible with corresponding format string conversion sscanf(line, "%d", &atomnum); ^ jcrt.c(82): warning #268: the format string ends before this argument fprintf(fpout, "%s\n", "This Jaguar input file (entry_name: %s) is generated by Antechamber", minfo.resname); ^ antechamber.c(408): warning #181: argument is incompatible with corresponding format string conversion sscanf(line, "%s%s%s%ld", tmpchar1, tmpchar2, tmpchar3, &bond[num++].type); ^ icc -O2 antechamber.o -lm -o antechamber icc -O2 -c -o atomtype.o atomtype.c mol2.c(64): warning #181: argument is incompatible with corresponding format string conversion sscanf(line, "%ld%ld", &read_atomnum, &read_bondnum); ^ mol2.c(64): warning #181: argument is incompatible with corresponding format string conversion sscanf(line, "%ld%ld", &read_atomnum, &read_bondnum); ^ icc -O2 atomtype.o -lm -o atomtype g++ -c -o bondtype.o bondtype.C g++ bondtype.o -lm -o bondtype icc -O2 -c -o charmmgen.o charmmgen.c mol2.c(64): warning #181: argument is incompatible with corresponding format string conversion sscanf(line, "%ld%ld", &read_atomnum, &read_bondnum); ^ mol2.c(64): warning #181: argument is incompatible with corresponding format string conversion sscanf(line, "%ld%ld", &read_atomnum, &read_bondnum); ^ icc -O2 charmmgen.o -lm -o charmmgen icc -O2 -c -o database.o database.c database.c(653): warning #181: argument is incompatible with corresponding format string conversion printf("\nMolname defined starting Id = %d", id); ^ database.c(673): warning #268: the format string ends before this argument printf("\nImmediate stop line", stop_line); ^ database.c(776): warning #181: argument is incompatible with corresponding format string conversion printf("\nProcessing: %-8ld id=%7d, comp. name = %s\n", cmpd_num, id - 1, molname); ^ database.c(778): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpprocess, "\nProcessing: %-8ld id=%7d, comp. name = %s\n", cmpd_num, id - 1, molname); ^ database.c(902): warning #181: argument is incompatible with corresponding format string conversion printf("\nProcessing: %-8ld id=%7d, comp. name = %s", cmpd_num, id - 1, molname); ^ database.c(904): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpprocess, "\nProcessing: %-8ld id=%7d, comp. name = %s", cmpd_num, id - 1, molname); ^ database.c(1117): warning #181: argument is incompatible with corresponding format string conversion printf("\nProcessing: %-8ld id=%7d, comp. name = %s", cmpd_num, id - 1, molname); ^ database.c(1119): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpprocess, "\nProcessing: %-8ld id=%7d, comp. name = %s", cmpd_num, id - 1, molname); ^ icc -O2 database.o -lm -o database icc -O2 -c -o espgen.o espgen.c icc -O2 espgen.o -o espgen icc -O2 -c -o parmcal.o parmcal.c parmcal.c(107): warning #267: the format string requires additional arguments fprintf(stderr, "Error, the number of angle parameters (%ld) exceed 10 * MAXATOMTYPE * MAXATOMTYPE, increase MAXATOMTYPE (%d) in define.h, angleparmnum, MAXATOMTYPE\n"); ^ icc -O2 parmcal.o -lm -o parmcal icc -O2 -c -o parmchk.o parmchk.c mol2.c(64): warning #181: argument is incompatible with corresponding format string conversion sscanf(line, "%ld%ld", &read_atomnum, &read_bondnum); ^ mol2.c(64): warning #181: argument is incompatible with corresponding format string conversion sscanf(line, "%ld%ld", &read_atomnum, &read_bondnum); ^ icc -O2 parmchk.o -lm -o parmchk icc -O2 -c -o prepgen.o prepgen.c icc -O2 prepgen.o -lm -o prepgen icc -O2 -c -o respgen.o respgen.c respgen.c(405): warning #267: the format string requires additional arguments fprintf(stderr, "The number of atoms (%d) exceed the MAX_RESP_ATOM (%d) defined in respgen.c, extend MAX_RESP_ATOM and recompile the program\n, atomnum, MAX_RESP_ATOM"); ^ icc -O2 respgen.o -lm -o respgen icc -O2 -c -o translate.o translate.c mol2.c(64): warning #181: argument is incompatible with corresponding format string conversion sscanf(line, "%ld%ld", &read_atomnum, &read_bondnum); ^ mol2.c(64): warning #181: argument is incompatible with corresponding format string conversion sscanf(line, "%ld%ld", &read_atomnum, &read_bondnum); ^ icc -O2 translate.o -lm -o translate icc -O2 -c -o top2mol2.o top2mol2.c top2mol2.c(194): warning #181: argument is incompatible with corresponding format string conversion sscanf(line, "%d", &crd_atomnum); ^ top2mol2.c(433): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpout, "%5d%6d%6d%6d%6d\n", atomnum-3*resnum_water, bondnum-3*resnum_water, resnum-resnum_water, 0, 0); ^ top2mol2.c(433): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpout, "%5d%6d%6d%6d%6d\n", atomnum-3*resnum_water, bondnum-3*resnum_water, resnum-resnum_water, 0, 0); ^ top2mol2.c(433): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpout, "%5d%6d%6d%6d%6d\n", atomnum-3*resnum_water, bondnum-3*resnum_water, resnum-resnum_water, 0, 0); ^ top2mol2.c(435): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpout, "%5d%6d%6d%6d%6d\n", atomnum, bondnum, resnum, 0, 0); ^ top2mol2.c(435): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpout, "%5d%6d%6d%6d%6d\n", atomnum, bondnum, resnum, 0, 0); ^ top2mol2.c(435): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpout, "%5d%6d%6d%6d%6d\n", atomnum, bondnum, resnum, 0, 0); ^ top2mol2.c(451): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpout, "%7d %-8s%10.4lf%10.4lf%10.4lf %-6s%5d %-8s%10.4lf\n", tmpint, atomname[i].str, ^ top2mol2.c(452): warning #181: argument is incompatible with corresponding format string conversion coord_x[i], coord_y[i], coord_z[i], atomtype[i].str, resno[i],tmpc2, charge[i]); ^ top2mol2.c(477): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpout, "%6d %-7s %6d RESIDUE 1 A\n", i + 1, tmpc2, reshead[i]); ^ top2mol2.c(477): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpout, "%6d %-7s %6d RESIDUE 1 A\n", i + 1, tmpc2, reshead[i]); ^ top2mol2.c(485): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpout, "%6d %-7s %6d RESIDUE 1 A\n", i + 1, tmpc2, reshead[i]); ^ top2mol2.c(485): warning #181: argument is incompatible with corresponding format string conversion fprintf(fpout, "%6d %-7s %6d RESIDUE 1 A\n", i + 1, tmpc2, reshead[i]); ^ icc -O2 top2mol2.o -lm -o top2mol2 cp -f mopac.sh ../exe cp -f dacdif ../exe mv -f am1bcc antechamber atomtype bondtype charmmgen database espgen parmcal parmchk prepgen respgen translate top2mol2 ../exe make[1]: Leaving directory `/home/jramirez/antechamber-1.27/antechamber' cd mopac6/src; make install make[1]: Entering directory `/home/jramirez/antechamber-1.27/mopac6/src' ifort -c -O2 -fno-automatic -finit-local-zero -o aababc.o aababc.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o readmo.o readmo.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o writmo.o writmo.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o mopac.o mopac.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o analyt.o analyt.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o anavib.o anavib.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o axis.o axis.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o block.o block.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o bonds.o bonds.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o brlzon.o brlzon.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o calpar.o calpar.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o capcor.o capcor.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o cdiag.o cdiag.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o chrge.o chrge.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o cnvg.o cnvg.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o compfg.o compfg.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o datin.o datin.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o dcart.o dcart.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o delmol.o delmol.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o delri.o delri.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o denrot.o denrot.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o densit.o densit.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o depvar.o depvar.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o deri0.o deri0.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o deri1.o deri1.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o deri2.o deri2.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o deri21.o deri21.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o deri22.o deri22.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o deri23.o deri23.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o deritr.o deritr.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o deriv.o deriv.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o dernvo.o dernvo.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o ders.o ders.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o dfock2.o dfock2.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o dfpsav.o dfpsav.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o diag.o diag.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o diat.o diat.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o diat2.o diat2.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o diis.o diis.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o dijkl1.o dijkl1.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o dijkl2.o dijkl2.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o dipind.o dipind.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o dipole.o dipole.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o dofs.o dofs.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o dot.o dot.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o drc.o drc.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o drcout.o drcout.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o ef.o ef.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o enpart.o enpart.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o exchng.o exchng.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o ffhpol.o ffhpol.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o flepo.o flepo.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o fmat.o fmat.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o fock1.o fock1.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o fock2.o fock2.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o force.o force.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o formxy.o formxy.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o forsav.o forsav.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o frame.o frame.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o freqcy.o freqcy.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o geout.o geout.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o geoutg.o geoutg.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o getgeg.o getgeg.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o getgeo.o getgeo.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o getsym.o getsym.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o gettxt.o gettxt.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o gmetry.o gmetry.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o gover.o gover.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o grid.o grid.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o h1elec.o h1elec.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o haddon.o haddon.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o hcore.o hcore.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o helect.o helect.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o hqrii.o hqrii.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o ijkl.o ijkl.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o interp.o interp.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o iter.o iter.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o jcarin.o jcarin.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o linmin.o linmin.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o local.o local.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o locmin.o locmin.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o mamult.o mamult.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o matout.o matout.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o matpak.o matpak.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o meci.o meci.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o mecid.o mecid.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o mecih.o mecih.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o mecip.o mecip.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o moldat.o moldat.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o molval.o molval.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o mullik.o mullik.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o mult.o mult.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o nllsq.o nllsq.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o nuchar.o nuchar.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o parsav.o parsav.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o partxy.o partxy.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o pathk.o pathk.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o paths.o paths.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o perm.o perm.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o polar.o polar.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o powsav.o powsav.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o powsq.o powsq.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o prtdrc.o prtdrc.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o quadr.o quadr.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o react1.o react1.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o reada.o reada.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o refer.o refer.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o repp.o repp.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o rotat.o rotat.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o rotate.o rotate.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o rsp.o rsp.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o search.o search.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o second.o second.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o setupg.o setupg.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o solrot.o solrot.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o swap.o swap.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o symtry.o symtry.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o thermo.o thermo.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o timer.o timer.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o update.o update.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o vecprt.o vecprt.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o wrtkey.o wrtkey.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o wrttxt.o wrttxt.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o xyzint.o xyzint.f ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort aababc.o readmo.o writmo.o mopac.o analyt.o anavib.o axis.o block.o bonds.o brlzon.o calpar.o capcor.o cdiag.o chrge.o cnvg.o compfg.o datin.o dcart.o delmol.o delri.o denrot.o densit.o depvar.o deri0.o deri1.o deri2.o deri21.o deri22.o deri23.o deritr.o deriv.o dernvo.o ders.o dfock2.o dfpsav.o diag.o diat.o diat2.o diis.o dijkl1.o dijkl2.o dipind.o dipole.o dofs.o dot.o drc.o drcout.o ef.o enpart.o exchng.o ffhpol.o flepo.o fmat.o fock1.o fock2.o force.o formxy.o forsav.o frame.o freqcy.o geout.o geoutg.o getgeg.o getgeo.o getsym.o gettxt.o gmetry.o gover.o grid.o h1elec.o haddon.o hcore.o helect.o hqrii.o ijkl.o interp.o iter.o jcarin.o linmin.o local.o locmin.o mamult.o matout.o matpak.o meci.o mecid.o mecih.o mecip.o moldat.o molval.o mullik.o mult.o nllsq.o nuchar.o parsav.o partxy.o pathk.o paths.o perm.o polar.o powsav.o powsq.o prtdrc.o quadr.o react1.o reada.o refer.o repp.o rotat.o rotate.o rsp.o search.o second.o setupg.o solrot.o swap.o symtry.o thermo.o timer.o update.o vecprt.o wrtkey.o wrttxt.o xyzint.o -o mopac mv mopac ../../exe make[1]: Leaving directory `/home/jramirez/antechamber-1.27/mopac6/src' cd resp; make install make[1]: Entering directory `/home/jramirez/antechamber-1.27/resp' ifort -c -O2 -fno-automatic -finit-local-zero -o amopen.o amopen.F ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o lapack.o lapack.F ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o mexit.o mexit.F ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort -c -O2 -fno-automatic -finit-local-zero -o resp.o resp.F ifort: Command line warning: ignoring unknown option '-fno-automatic' ifort: Command line warning: ignoring unknown option '-finit-local-zero' ifort amopen.o lapack.o mexit.o resp.o -o resp mv resp ../exe make[1]: Leaving directory `/home/jramirez/antechamber-1.27/resp'