Hi, I have installed SHIFTS 4.2 as a subdirectory of NAB 5.1.2 on Linux
Red Hat. NAB installed fine, and passed all tests.
Make install for SHIFTS worked without obvious errors, but the last
lines of output from "make test" gave the following error messages:
< 132d CYT 24 H3' -0.05 0.29 0.00 0.00 4.36 4.60
< 132d CYT 24 H2'1 -0.35 0.15 0.00 0.00 2.24 2.04
< 132d CYT 24 H2'2 -0.12 0.09 0.00 0.00 2.17 2.14
FAILED (possibly: see if diffs above look OK)
=====================================================
Running test for carbon/nitrogen shifts in a protein
../bin/shifts -qdb -refine 1acf
make[1]: *** [1acf_test] Segmentation fault
make[1]: Leaving directory `/amnt/tcpl1/tomp/nab-5.1.2/shifts-4.2/test'
make: *** [test] Error 2
Also, when I attempted to run the bpti test, I get output with no rings
found and the following "messages" file:
> shifts will be computed for atoms matching ::H*
>
> Getting sequence from 132d.atom
>
>
> Getting coordinates from 132d.atom
>
> Got 0 coordinates using getxyz_from_pdb
>
> Reading observed shifts from 132d.obs
>
Any suggestions would be appreciated.
Thanks,
Tom Pochapsky
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Received on Sun Jul 29 2007 - 06:07:49 PDT
