Dear amber users,
I am trying to plot the residue wise RMSD for a protein.
i tried using this statement in ff.in in ptraj:
rms out final_eq_rms.out :1-220.CA.
But it calculates rmsd time wise with x-axis time frame and y-axis RMSD (of
whole molecule).
how i can i get residue wise RMS with x-axis residue number and y-axis RMSD
(of each residue over all time frame).
I read that CARNAL module can do that. but carnal is not available in
Amber8.
how can i do that?
ravishk
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Received on Sun Jul 29 2007 - 06:07:22 PDT
