Dear Manvendra
Please post these types of queries to the amber mailing list/reflector in
future - see
http://amber.scripps.edu for details of how to sign up.
> I m a new user to AMBER. I am using your tutorial for simulation and
> analyzing DNA polyA-polyT Decamer.
> i have reached to the chapter 3.3 (-analysing the result).
> i want to know that do i have to use pearl script for analysing the
> simulation result?
You don't have to use the perl script - you can analyze the result any way
you want. Even better would be if you wrote your own perl script or similar
analysis script in a language of your choice since then you'd get a much
better understanding of everything.
> if yes , then i want to know will AMBER 8 OR 9 provide this pearl
> script in support to run analysis?
> or i have to download it ?
You need to download it. See section 3.3.1 where there is text which says:
If you are working on this tutorial on your own machine then you can
download the perl script here.
Click on the "here" and you can save the perl script to a directory of your
choosing.
For reference the path to the script is:
http://amber.scripps.edu/tutorials/basic/tutorial1/files/process_mdout.perl
All the best
Ross
/\
\/
|\oss Walker
| HPC Consultant and Staff Scientist |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
|
http://www.rosswalker.co.uk | PGP Key available on request |
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Received on Sun Jul 29 2007 - 06:07:12 PDT
