Because the intervening interventions may have blurred the original message
concerning unsuccessful attempts at compiling Amber9 parallel, this is posted
here again. Serial compilation was OK.
openmpi-1.2.3 was compiled on Debian Linux amd64 etch with
./configure CC=/opt/intel/cce/9.1.042/bin/icc
CXX=/opt/intel/cce/9.1.042/bin/icpc F77=/opt/intel/fce/9.1.036/bin/ifort
FC=/opt/intel/fce/9.1.036/bin/ifort --with-libnuma=/usr/lib
Both
ompi_info |grep libnuma
and
ompi_info |grep maffinity
reported positively.
If useful to know:
/usr/local/openmpi-1.2.3/ompi/mpi/f90 (which also contains c cxx f77).
Amber9 parallel compilation was attempted on the same machine by first setting:
export MPI_HOME=/usr/local/openmpi-1.2.3
Then:
make clean
./configure -openmpi ifort_x86_64
(must say that I did not find on the configure help a flag for the intel C
compiler used for openmpi, though probably this is not the issue; the
application is set to use gcc)
make parallel >& errors.log
In attachment: errors.logREN and config.hREN (renamed in order to have true
attachments with gnome of this i386 desktop)
Thanks
francesco pietra
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Received on Sun Jul 29 2007 - 06:07:04 PDT
