Hi Benjamin,
Thank you for your reply.
If possible, could you let me know what did you treat your file?
I only applied output files from sander to VMD.
After the same procedure, outputs of GB model is normal.
Thus, I cannot find how should I do.
Miki
At 09:17 07/07/12 +0200, you wrote:
>Hi Miki,
>
>the pictures you sent look to me like you loaded the trajectory wrongly
>in VMD. VMD can load amber trajectorys with and without periodic box
>information. You have to specify that correctly though. When i did this
>wrong in the past it pretty much looked like the pictures you sent.
>
>Benjamin
_/_/_/ $B<.ITI,.8!!=yITI,;`(B _/_/_/
_/_/_/ M. MAEDA _/_/_/
_/_/_/ mmaeda.nias.affrc.go.jp _/_/_/
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Received on Sun Jul 15 2007 - 06:07:22 PDT
