> how does the tleap change the tree name after loading the PREP parameter
> file?
It discards the tree info and when doing saveamberparm it develops
new tree types for each residue that has connect0 and connect1 atoms
designated. The only really predictable thing about the new types is
that the 'M' (main chain) atoms are on a shortest path between connect0
and connect1.
Bill
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Received on Sun Dec 31 2006 - 06:07:46 PST
