AMBER: coordinate out of bounds

From: Miguel Ferreira <>
Date: Thu, 14 Dec 2006 01:09:57 +0000


I want to do an ED calculation and used the following script

trajin mds_500ps.mdcrd
rms first .CA
matrix covar name mcovar .CA out mcovar.dat
analyse matrix mcovar out evec.pev vecs 25

The calculation takes about 2 minutes and I obtain the output files. However
I also obtain the following error:

ERROR in readAmberTrajectory(): Set #2501 has coordinate out of bounds (i.e.

[3] Done ptraj < >

I donīt understand this because my trajectory has only 2500 frames. Does
anyone know what this error means?


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Received on Thu Dec 14 2006 - 05:00:06 PST
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