Dear Amber Users,
I have a basic question for the RDF calcuation by "radial" command in the Ptraj.
Since in the calculation, I can specify several mask atoms, (for example:
radial output.dat 0.05 15 :1.N1,H9 :1.N,H) does AMBER pick a centriod between the selected atoms to place a dummy atom and then the distances between those dummy atoms are plotted? And also I only get standard.xmgr and volumn.xmgr file after calculations, I didn't get carnal.xmgr, is there something wrong for that?
Thank you very much for your help!
All the bests,
Ping
Esther B.
---------------------------------
Check out the all-new Yahoo! Mail beta - Fire up a more powerful email and get things done faster.
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Dec 13 2006 - 05:22:05 PST
