Dear Amber users,
I have a problem to calculate the dihedral angles. Since there are 2 amino acid in the 2 sides of the main chain, I want to use hte diheral angle to discibe it. But after I calculate the the dihedral angle through "dihedral" command by specify 4 atoms for each of amino acid, I found theri angles are similar. How can I define the dihedral angle direction in the calculation? Or maybe there are some other ways to do it. Any suggestion will be greatly appreciated!
Bests
Esther B.
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Received on Sun Dec 10 2006 - 06:07:06 PST
