- Contemporary messages sorted: [ by date ] [ by thread ] [ by subject ] [ by author ] [ by messages with attachments ]

From: bertrand russell <betrussell23.gmail.com>

Date: Sat, 2 Dec 2006 22:11:23 +0530

Dear Amber users,

I am a new user of amber. When I tried to load

my pdb file to which I added phophate groups using INSIGHT 2 builder module,

I am getting the following fatal errors. One thing I could not understand

is,

FATAL: Atom .R<NMET 1>.A<H 20> does not have a type.

When I used the same file without the addition of phophate groups to the TYR

residues I am not getting this particular error message. Thanks for your

help.

Checking Unit.

FATAL: Atom .R<NMET 1>.A<H 20> does not have a type.

FATAL: Atom .R<TYR 189>.A<HB1 22> does not have a type.

FATAL: Atom .R<TYR 189>.A<HZ 23> does not have a type.

FATAL: Atom .R<TYR 189>.A<P 24> does not have a type.

FATAL: Atom .R<TYR 189>.A<OP1 25> does not have a type.

FATAL: Atom .R<TYR 189>.A<OP2 26> does not have a type.

FATAL: Atom .R<TYR 189>.A<OP3 27> does not have a type.

FATAL: Atom .R<TYR 189>.A<OP4 28> does not have a type.

FATAL: Atom .R<TYR 193>.A<HB1 22> does not have a type.

FATAL: Atom .R<TYR 193>.A<HZ 23> does not have a type.

FATAL: Atom .R<TYR 193>.A<P 24> does not have a type.

FATAL: Atom .R<TYR 193>.A<OP1 25> does not have a type.

FATAL: Atom .R<TYR 193>.A<OP2 26> does not have a type.

FATAL: Atom .R<TYR 193>.A<OP3 27> does not have a type.

FATAL: Atom .R<TYR 193>.A<OP4 28> does not have a type.

FATAL: Atom .R<TYR 194>.A<HB1 22> does not have a type.

FATAL: Atom .R<TYR 194>.A<P 23> does not have a type.

FATAL: Atom .R<TYR 194>.A<OP1 24> does not have a type.

FATAL: Atom .R<TYR 194>.A<OP2 25> does not have a type.

FATAL: Atom .R<TYR 194>.A<OP3 26> does not have a type.

FATAL: Atom .R<TYR 194>.A<OP4 27> does not have a type.

Failed to generate parameters

Parameter file was not saved.

Date: Sat, 2 Dec 2006 22:11:23 +0530

Dear Amber users,

I am a new user of amber. When I tried to load

my pdb file to which I added phophate groups using INSIGHT 2 builder module,

I am getting the following fatal errors. One thing I could not understand

is,

FATAL: Atom .R<NMET 1>.A<H 20> does not have a type.

When I used the same file without the addition of phophate groups to the TYR

residues I am not getting this particular error message. Thanks for your

help.

Checking Unit.

FATAL: Atom .R<NMET 1>.A<H 20> does not have a type.

FATAL: Atom .R<TYR 189>.A<HB1 22> does not have a type.

FATAL: Atom .R<TYR 189>.A<HZ 23> does not have a type.

FATAL: Atom .R<TYR 189>.A<P 24> does not have a type.

FATAL: Atom .R<TYR 189>.A<OP1 25> does not have a type.

FATAL: Atom .R<TYR 189>.A<OP2 26> does not have a type.

FATAL: Atom .R<TYR 189>.A<OP3 27> does not have a type.

FATAL: Atom .R<TYR 189>.A<OP4 28> does not have a type.

FATAL: Atom .R<TYR 193>.A<HB1 22> does not have a type.

FATAL: Atom .R<TYR 193>.A<HZ 23> does not have a type.

FATAL: Atom .R<TYR 193>.A<P 24> does not have a type.

FATAL: Atom .R<TYR 193>.A<OP1 25> does not have a type.

FATAL: Atom .R<TYR 193>.A<OP2 26> does not have a type.

FATAL: Atom .R<TYR 193>.A<OP3 27> does not have a type.

FATAL: Atom .R<TYR 193>.A<OP4 28> does not have a type.

FATAL: Atom .R<TYR 194>.A<HB1 22> does not have a type.

FATAL: Atom .R<TYR 194>.A<P 23> does not have a type.

FATAL: Atom .R<TYR 194>.A<OP1 24> does not have a type.

FATAL: Atom .R<TYR 194>.A<OP2 25> does not have a type.

FATAL: Atom .R<TYR 194>.A<OP3 26> does not have a type.

FATAL: Atom .R<TYR 194>.A<OP4 27> does not have a type.

Failed to generate parameters

Parameter file was not saved.

-- Live Life; Don't pass it Bertrand.P.S.Russell ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to amber.scripps.edu To unsubscribe, send "unsubscribe amber" to majordomo.scripps.eduReceived on Sun Dec 03 2006 - 06:08:09 PST

Custom Search