AMBER: NEWPDB.PDB from antechamber

From: Esther Brugger <esther_brugger.yahoo.com>
Date: Wed, 1 Nov 2006 08:59:29 -0800 (PST)

Hello everyone,
 
 I am using the antechamber to calculate the charge. I checked the divcon.out file, it seems everything is OK. But when I load the output file "NEWPDB.PDB" in xleap or VMD, I found the structure is not corret, it is a littlbe bit mess up. Do you think is there something wrong there? If I load the initial pdb file with the prepin and frcmod files in xleap, it is no problem. Do you think I can still use the initial pdb file to do the other calcuations? Thanks a lot for your help!
 
 Bests,
 Esther B.



 
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Received on Sun Nov 05 2006 - 06:07:09 PST
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