make[2]: Leaving directory `/opt/amber9/src/lmod' cd ../lmod; cp lmodprmtop ../../exe; chmod 0755 ../../exe/lmodprmtop /opt/intel_fc_80/bin/ifort -FR -o sander.MPI evb_vars.o evb_input.o evb_init.o evb_alloc.o evb_dealloc.o check_input.o evb_io.o evb_keywrd.o exchange_CM.o evb_mcp.o evb_force.o diabatic.o evb_2stdebug.o egap_umb_2stdebug.o exchange_gauss.o exchange_warshel.o morsify.o morse_anal2num.o evb_matrix.o evb_ntrfc.o out_evb.o constants.o stack.o qmmm_module.o trace.o lmod.o decomp.o icosasurf.o egb.o findmask.o pb_force.o pb_exmol.o pb_mpfrc.o pb_direct.o pb_list.o np_force.o sa_driver.o relax_mat.o nmr.o multisander.o sander.o trajene.o cshf.o nmrcal.o pearsn.o printe.o runmin.o rdparm.o mdread.o locmem.o runmd.o getcor.o degcnt.o decnvh.o fastwt.o parallel.o shake.o ene.o mdwrit.o minrit.o set.o dynlib.o mdfil.o nmlsrc.o ew_force.o ew_setup.o ew_box.o ew_bspline.o ew_fft.o nonbond_list.o short_ene.o ew_recip.o pcshift.o align.o rfree.o rgroup.o random.o amopen.o debug.o ew_recip_reg.o ew_handle_dips.o ew_dipole_recip.o mexit.o new_time.o extra_pts.o thermo_int.o matinv.o assert.o mmtsb.o mmtsb_client.o erfcfun.o veclib.o is_init.o constantph.o prn_dipoles.o ips.o sglds.o amoeba_valence.o amoeba_multipoles.o amoeba_recip.o amoeba_interface.o amoeba_direct.o amoeba_mdin.o amoeba_adjust.o amoeba_self.o amoeba_vdw.o amoeba_induced.o amoeba_runmd.o bintraj.o spatial_recip.o spatial_fft.o parms.o qm_mm.o qm_link_atoms.o qm_nb_list.o qm_extract_coords.o qm_ewald.o qm_gb.o qm_zero_charges.o qm_print_info.o qm_assign_atom_types.o qm2_allocate_e_repul.o qm2_calc_charges.o qm2_calc_rij_and_eqns.o qm2_dihed.o qm2_energy.o qm2_fock.o qm2_get_qm_forces.o qm2_get_qmmm_forces.o qm2_h1elec.o qm2_hcore_qmqm.o qm2_hcore_qmmm.o qm2_identify_peptide_links.o qm2_load_params_and_allocate.o qm2_repp.o qm2_rotate_qmqm.o qm2_scf.o qm2_setup_orb_exp.o qm2_smallest_number.o qm2_dftb_module.o qm2_dftb_broyden.o qm2_dftb_dispersion_egr.o qm2_dftb_dispersion_params.o qm2_dftb_dispersionread.o qm2_dftb_eglcao.o qm2_dftb_energy.o qm2_dftb_ewevge.o qm2_dftb_externalchgrad.o qm2_dftb_externalshift.o qm2_dftb_fermi.o qm2_dftb_forces.o qm2_dftb_gamma.o qm2_dftb_gammamat.o qm2_dftb_get_qmmm_forces.o qm2_dftb_gettab.o qm2_dftb_load_params.o qm2_dftb_long_range.o qm2_dftb_main.o qm2_dftb_my_gradient.o qm2_dftb_my_mulliken.o qm2_dftb_repulsiv.o qm2_dftb_self.o qm2_dftb_shift.o qm2_dftb_short_range.o qm2_dftb_skpar.o qm2_dftb_slkode.o qm2_dftb_slktrafo.o \ qm_div.o force.o \ ../lmod/lmod.a ../lapack/lapack.a ../blas/blas.a \ ../lib/nxtsec.o ../lib/sys.a -lmpi evb_init.o(.text+0x790): In function `evb_init_': : undefined reference to `mpi_bcast_' evb_init.o(.text+0x7cc): In function `evb_init_': : undefined reference to `mpi_bcast_' evb_init.o(.text+0x14ed): In function `evb_init_': : undefined reference to `mpi_bcast_' evb_init.o(.text+0x1adb): In function `evb_init_': : undefined reference to `mpi_bcast_' evb_init.o(.text+0x2484): In function `evb_init_': : undefined reference to `mpi_bcast_' evb_init.o(.text+0x2768): more undefined references to `mpi_bcast_' follow qmmm_module.o(.text+0x175d): In function `qmmm_module_mp_qmmm_mpi_setup_': : undefined reference to `mpi_recv_' qmmm_module.o(.text+0x195a): In function `qmmm_module_mp_qmmm_mpi_setup_': : undefined reference to `mpi_send_' qmmm_module.o(.text+0x1bef): In function `qmmm_module_mp_qmmm_mpi_setup_': : undefined reference to `mpi_recv_' qmmm_module.o(.text+0x1de6): In function `qmmm_module_mp_qmmm_mpi_setup_': : undefined reference to `mpi_send_' egb.o(.text+0x2b67): In function `genborn_mp_egb_': : undefined reference to `mpi_allreduce_' egb.o(.text+0x79bb): In function `genborn_mp_egb_calc_radii_': : undefined reference to `mpi_allreduce_' multisander.o(.text+0x41): In function `MAIN__': : undefined reference to `mpi_init_' multisander.o(.text+0x6d): In function `MAIN__': : undefined reference to `mpi_comm_rank_' multisander.o(.text+0x91): In function `MAIN__': : undefined reference to `mpi_comm_size_' multisander.o(.text+0xad): In function `MAIN__': : undefined reference to `mpi_barrier_' multisander.o(.text+0x124): In function `MAIN__': : undefined reference to `mpi_bcast_' multisander.o(.text+0x308): In function `MAIN__': : undefined reference to `mpi_bcast_' multisander.o(.text+0x583): In function `MAIN__': : undefined reference to `mpi_bcast_' multisander.o(.text+0x5bf): In function `MAIN__': : undefined reference to `mpi_bcast_' multisander.o(.text+0x65c): In function `MAIN__': : undefined reference to `mpi_bcast_' multisander.o(.text+0x6ca): In function `MAIN__': : undefined reference to `mpi_barrier_' multisander.o(.text+0x734): In function `MAIN__': : undefined reference to `mpi_comm_split_' multisander.o(.text+0x885): In function `MAIN__': : undefined reference to `mpi_comm_size_' multisander.o(.text+0x8a9): In function `MAIN__': : undefined reference to `mpi_comm_rank_' multisander.o(.text+0x921): In function `MAIN__': : undefined reference to `mpi_comm_split_' multisander.o(.text+0xa4e): In function `MAIN__': : undefined reference to `mpi_comm_size_' multisander.o(.text+0xa72): In function `MAIN__': : undefined reference to `mpi_comm_rank_' multisander.o(.text+0xd22): In function `MAIN__': : undefined reference to `mpi_bcast_' multisander.o(.text+0xd3e): In function `MAIN__': : undefined reference to `mpi_barrier_' multisander.o(.text+0x133d): In function `MAIN__': : undefined reference to `mpi_barrier_' multisander.o(.text+0x19b5): In function `MAIN__': : undefined reference to `mpi_barrier_' multisander.o(.text+0x1aff): In function `MAIN__': : undefined reference to `mpi_allgather_' multisander.o(.text+0x30f1): In function `MAIN__': : undefined reference to `mpi_barrier_' multisander.o(.text+0x32b0): In function `MAIN__': : undefined reference to `mpi_barrier_' multisander.o(.text+0x3337): In function `MAIN__': : undefined reference to `mpi_comm_free_' multisander.o(.text+0x3371): In function `MAIN__': : undefined reference to `mpi_comm_free_' multisander.o(.text+0x34f0): In function `subrem_': : undefined reference to `mpi_allgather_' multisander.o(.text+0x353c): In function `subrem_': : undefined reference to `mpi_allgather_' multisander.o(.text+0x3588): In function `subrem_': : undefined reference to `mpi_allgather_' multisander.o(.text+0x4808): In function `subrem_': : undefined reference to `mpi_barrier_' multisander.o(.text+0x485d): In function `subrem_': : undefined reference to `mpi_send_' multisander.o(.text+0x48ef): In function `subrem_': : undefined reference to `mpi_barrier_' multisander.o(.text+0x494a): In function `subrem_': : undefined reference to `mpi_recv_' multisander.o(.text+0x4a18): In function `subrem_': : undefined reference to `mpi_barrier_' multisander.o(.text+0x4a6c): In function `subrem_': : undefined reference to `mpi_gather_' multisander.o(.text+0x4ac0): In function `subrem_': : undefined reference to `mpi_gather_' multisander.o(.text+0x4b04): In function `subrem_': : undefined reference to `mpi_allreduce_' sander.o(.text+0x2763): In function `sander_': : undefined reference to `mpi_bcast_' sander.o(.text+0x279f): In function `sander_': : undefined reference to `mpi_bcast_' sander.o(.text+0x27db): In function `sander_': : undefined reference to `mpi_bcast_' sander.o(.text+0x27fc): In function `sander_': : undefined reference to `mpi_barrier_' sander.o(.text+0x2e3c): In function `sander_': : undefined reference to `mpi_bcast_' sander.o(.text+0x5fe9): In function `sander_': : undefined reference to `mpi_bcast_' nmrcal.o(.text+0x165e): In function `nmrcal_': : undefined reference to `mpi_bcast_' nmrcal.o(.text+0x169a): In function `nmrcal_': : undefined reference to `mpi_bcast_' nmrcal.o(.text+0x16eb): In function `nmrcal_': : undefined reference to `mpi_bcast_' nmrcal.o(.text+0x1738): more undefined references to `mpi_bcast_' follow runmin.o(.text+0x73e): In function `runmin_': : undefined reference to `mpi_sendrecv_' runmin.o(.text+0x78c): In function `runmin_': : undefined reference to `mpi_sendrecv_' runmin.o(.text+0x82b): In function `runmin_': : undefined reference to `mpi_bcast_' runmin.o(.text+0x852): In function `runmin_': : undefined reference to `mpi_bcast_' mdread.o(.text+0x10872): In function `mdread2_': : undefined reference to `mpi_bcast_' mdread.o(.text+0x108bc): In function `mdread2_': : undefined reference to `mpi_bcast_' mdread.o(.text+0x10a1b): In function `mdread2_': : undefined reference to `mpi_sendrecv_' mdread.o(.text+0x10a95): In function `mdread2_': : undefined reference to `mpi_sendrecv_' runmd.o(.text+0xd47): In function `runmd_': : undefined reference to `mpi_allreduce_' runmd.o(.text+0x1080): In function `runmd_': : undefined reference to `mpi_sendrecv_' runmd.o(.text+0x10cf): In function `runmd_': : undefined reference to `mpi_sendrecv_' runmd.o(.text+0x12b0): In function `runmd_': : undefined reference to `mpi_bcast_' runmd.o(.text+0x12d6): In function `runmd_': : undefined reference to `mpi_bcast_' runmd.o(.text+0x1595): In function `runmd_': : undefined reference to `mpi_bcast_' runmd.o(.text+0x1e6f): In function `runmd_': : undefined reference to `mpi_allreduce_' runmd.o(.text+0x506f): In function `runmd_': : undefined reference to `mpi_sendrecv_' runmd.o(.text+0x50be): In function `runmd_': : undefined reference to `mpi_sendrecv_' runmd.o(.text+0x5163): In function `runmd_': : undefined reference to `mpi_bcast_' runmd.o(.text+0x5189): In function `runmd_': : undefined reference to `mpi_bcast_' parallel.o(.text+0x52): In function `startup_': : undefined reference to `mpi_bcast_' parallel.o(.text+0x8b): In function `startup_': : undefined reference to `mpi_bcast_' parallel.o(.text+0xc4): In function `startup_': : undefined reference to `mpi_bcast_' parallel.o(.text+0xfd): more undefined references to `mpi_bcast_' follow parallel.o(.text+0xb3e): In function `startup_': : undefined reference to `mpi_barrier_' parallel.o(.text+0xd3a): In function `fdist_': : undefined reference to `mpi_reduce_' parallel.o(.text+0xe69): In function `fdist_': : undefined reference to `mpi_allreduce_' parallel.o(.text+0xfa9): In function `fdist_': : undefined reference to `mpi_allreduce_' parallel.o(.text+0x1275): In function `fsum_': : undefined reference to `mpi_sendrecv_' parallel.o(.text+0x1380): In function `fsum_': : undefined reference to `mpi_reduce_scatter_' parallel.o(.text+0x15f6): In function `xdist_': : undefined reference to `mpi_sendrecv_' parallel.o(.text+0x16c9): In function `xdist_': : undefined reference to `mpi_allgatherv_' ew_force.o(.text+0x3e): In function `ewald_force_': : undefined reference to `mpi_comm_rank_' ew_force.o(.text+0x57): In function `ewald_force_': : undefined reference to `mpi_comm_size_' ew_force.o(.text+0x414): In function `ewald_force_': : undefined reference to `mpi_comm_size_' ew_force.o(.text+0x42d): In function `ewald_force_': : undefined reference to `mpi_comm_rank_' ew_force.o(.text+0x1adc): In function `ewald_force_': : undefined reference to `mpi_comm_rank_' ew_force.o(.text+0x1af5): In function `ewald_force_': : undefined reference to `mpi_comm_size_' ew_force.o(.text+0x1cc3): In function `ewald_force_': : undefined reference to `mpi_allreduce_' ew_force.o(.text+0x2119): In function `ewald_force_': : undefined reference to `mpi_allreduce_' ew_force.o(.text+0x2395): In function `ewald_force_': : undefined reference to `mpi_comm_size_' ew_force.o(.text+0x23ae): In function `ewald_force_': : undefined reference to `mpi_comm_rank_' ew_force.o(.text+0x250f): In function `ewald_force_': : undefined reference to `mpi_comm_rank_' ew_force.o(.text+0x2528): In function `ewald_force_': : undefined reference to `mpi_comm_size_' ew_force.o(.text+0x2e29): In function `ewald_force_': : undefined reference to `mpi_comm_size_' ew_force.o(.text+0x2e42): In function `ewald_force_': : undefined reference to `mpi_comm_rank_' ew_force.o(.text+0x2fed): In function `ewald_force_': : undefined reference to `mpi_comm_rank_' ew_force.o(.text+0x3006): In function `ewald_force_': : undefined reference to `mpi_comm_size_' ew_setup.o(.text+0x1bcc): In function `ew_startup_': : undefined reference to `mpi_comm_size_' ew_setup.o(.text+0x1be3): In function `ew_startup_': : undefined reference to `mpi_comm_rank_' ew_setup.o(.text+0x1c96): In function `ew_startup_': : undefined reference to `mpi_comm_size_' ew_setup.o(.text+0x1cad): In function `ew_startup_': : undefined reference to `mpi_comm_rank_' ew_setup.o(.text+0x4ff4): In function `startup_groups_': : undefined reference to `mpi_bcast_' ew_fft.o(.text+0xff7): In function `xy_zx_transpose_.': : undefined reference to `mpi_isend_' ew_fft.o(.text+0x1097): In function `xy_zx_transpose_.': : undefined reference to `mpi_recv_' ew_fft.o(.text+0x1271): In function `xy_zx_transpose_.': : undefined reference to `mpi_wait_' ew_fft.o(.text+0x2c1b): In function `zx_xy_transpose_.': : undefined reference to `mpi_isend_' ew_fft.o(.text+0x2cbb): In function `zx_xy_transpose_.': : undefined reference to `mpi_recv_' ew_fft.o(.text+0x2e7d): In function `zx_xy_transpose_.': : undefined reference to `mpi_wait_' ew_fft.o(.text+0x2fe5): In function `xy_zx_trans_recv_': : undefined reference to `mpi_recv_' ew_fft.o(.text+0x3249): In function `zx_trans_recv_': : undefined reference to `mpi_recv_' nonbond_list.o(.text+0x2ad1): In function `nblist_mp_nonbond_list_': : undefined reference to `mpi_barrier_' nonbond_list.o(.text+0x2d1b): In function `nblist_mp_nonbond_list_': : undefined reference to `mpi_comm_size_' nonbond_list.o(.text+0x2d34): In function `nblist_mp_nonbond_list_': : undefined reference to `mpi_comm_rank_' nonbond_list.o(.text+0x3c29): In function `nblist_mp_nonbond_list_': : undefined reference to `mpi_allreduce_' nonbond_list.o(.text+0x4327): In function `nblist_mp_nonbond_list_': : undefined reference to `mpi_allreduce_' nonbond_list.o(.text+0x4501): In function `nblist_mp_nonbond_list_': : undefined reference to `mpi_allreduce_' nonbond_list.o(.text+0x451a): In function `nblist_mp_nonbond_list_': : undefined reference to `mpi_comm_rank_' nonbond_list.o(.text+0x4533): In function `nblist_mp_nonbond_list_': : undefined reference to `mpi_comm_size_' ew_recip.o(.text+0x12af): In function `ew_recip_mp_do_pmesh_kspace_': : undefined reference to `mpi_barrier_' debug.o(.text+0xa345): In function `get_analfrc_.': : undefined reference to `mpi_barrier_' debug.o(.text+0xa586): In function `get_analfrc_.': : undefined reference to `mpi_reduce_' debug.o(.text+0xa659): In function `get_analfrc_.': : undefined reference to `mpi_reduce_' debug.o(.text+0xaceb): In function `merge_forces_': : undefined reference to `mpi_reduce_' ew_dipole_recip.o(.text+0x7fe): In function `ew_dipole_recip_mp_do_pmesh_dipole_kspace_': : undefined reference to `mpi_barrier_' ew_dipole_recip.o(.text+0x9dd): In function `ew_dipole_recip_mp_do_pmesh_dipole_kspace_': : undefined reference to `mpi_barrier_' ew_dipole_recip.o(.text+0xe13): In function `ew_dipole_recip_mp_do_pmesh_dipole_kspace_': : undefined reference to `mpi_barrier_' mexit.o(.text+0x28): In function `mexit_': : undefined reference to `mpi_abort_' mexit.o(.text+0x4e): In function `mexit_': : undefined reference to `mpi_finalize_' new_time.o(.text+0x236): In function `timer_barrier_': : undefined reference to `mpi_barrier_' new_time.o(.text+0x7db): In function `profile_time_': : undefined reference to `mpi_send_' new_time.o(.text+0xc63): In function `profile_time_': : undefined reference to `mpi_recv_' ips.o(.text+0x13a8): In function `ipsupdate_.': : undefined reference to `mpi_allreduce_' sglds.o(.text+0x572): In function `sgldw_': : undefined reference to `mpi_allreduce_' sglds.o(.text+0x9ac): In function `sgmdw_': : undefined reference to `mpi_allreduce_' spatial_recip.o(.text+0xf43): In function `ew_recip_spatial_mp_spatial_do_pmesh_kspace_': : undefined reference to `mpi_barrier_' spatial_fft.o(.text+0xb0c): In function `fft_mp_transpose_.': : undefined reference to `mpi_type_contiguous_' spatial_fft.o(.text+0xb20): In function `fft_mp_transpose_.': : undefined reference to `mpi_type_commit_' spatial_fft.o(.text+0xd5a): In function `fft_mp_transpose_.': : undefined reference to `mpi_irecv_' spatial_fft.o(.text+0x10e6): In function `fft_mp_transpose_.': : undefined reference to `mpi_isend_' spatial_fft.o(.text+0x13f5): In function `fft_mp_transpose_.': : undefined reference to `mpi_waitany_' spatial_fft.o(.text+0x164b): In function `fft_mp_transpose_.': : undefined reference to `mpi_waitall_' spatial_fft.o(.text+0x165f): In function `fft_mp_transpose_.': : undefined reference to `mpi_type_free_' spatial_fft.o(.text+0x1bdd): In function `fft_mp_ftranspose_.': : undefined reference to `mpi_type_contiguous_' spatial_fft.o(.text+0x1bf1): In function `fft_mp_ftranspose_.': : undefined reference to `mpi_type_commit_' spatial_fft.o(.text+0x1e3e): In function `fft_mp_ftranspose_.': : undefined reference to `mpi_irecv_' spatial_fft.o(.text+0x2177): In function `fft_mp_ftranspose_.': : undefined reference to `mpi_waitany_' spatial_fft.o(.text+0x23cd): In function `fft_mp_ftranspose_.': : undefined reference to `mpi_waitall_' spatial_fft.o(.text+0x23fb): In function `fft_mp_ftranspose_.': : undefined reference to `mpi_type_free_' spatial_fft.o(.text+0x2789): In function `fft_mp_ftranspose_.': : undefined reference to `mpi_isend_' qm_ewald.o(.text+0x6a4): In function `qm_ewald_setup_': : undefined reference to `mpi_recv_' qm_ewald.o(.text+0x8b0): In function `qm_ewald_setup_': : undefined reference to `mpi_send_' qm2_load_params_and_allocate.o(.text+0x17ba7): In function `qm2_load_params_and_allocate_': : undefined reference to `mpi_allgather_' qm2_scf.o(.text+0x61e): In function `qm2_scf_': : undefined reference to `mpi_reduce_' qm2_scf.o(.text+0xbab): In function `qm2_scf_': : undefined reference to `mpi_bcast_' qm2_scf.o(.text+0x20ce): In function `qm2_scf_': : undefined reference to `mpi_allreduce_' force.o(.text+0x1f74): In function `force_': : undefined reference to `mpi_bcast_' force.o(.text+0x2679): In function `force_': : undefined reference to `mpi_allgather_' force.o(.text+0x26ab): In function `force_': : undefined reference to `mpi_allgather_' force.o(.text+0x2ad6): In function `force_': : undefined reference to `mpi_bcast_' force.o(.text+0x2b1a): In function `force_': : undefined reference to `mpi_bcast_' force.o(.text+0x2b42): In function `force_': : undefined reference to `mpi_bcast_' force.o(.text+0x2b69): In function `force_': : undefined reference to `mpi_bcast_' force.o(.text+0x2baf): In function `force_': : undefined reference to `mpi_bcast_' force.o(.text+0x2bd7): more undefined references to `mpi_bcast_' follow make[1]: *** [sander.MPI] Error 1 make[1]: Leaving directory `/opt/amber9/src/sander' make: *** [parallel] Error 2