Quoting sethl.gatech.edu:
> I would like to know the most common way to go about building nucleic acid
> complexes with custom/modified bases. Right now I have generated a
> library of
> prep files that contain my modified bases but then how would I go about
> constructing a structure file for a helicoidal duplex using these bases?
R.E.D. generates Tripos mol2 files which can be used instead of prep
files in LEaP.
LIB = loadmol2 yourfile.mol2
You can find nucleotide fragments in R.E.DD.B. as examples. See for instance:
Projects: F-61 up to F-64; F-57 up to F-59
regards, Francois
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Received on Wed Oct 25 2006 - 06:07:26 PDT
