Re: AMBER: modeling of ligand concentrations

From: Sean Rathlef <sean.syncitium.net>
Date: Mon, 16 Oct 2006 15:48:16 -0700

David,

----- Original Message -----
From: "David A. Case" <case.scripps.edu>
> On Mon, Oct 16, 2006, Sean Rathlef wrote:
>
>
> But the *free* energy estimates will know about standard states.
Basically
> the standard state of the the ligand (by default, 1M) is included in its
> translational entropy (ditto for the receptor and the complex). So, the
> mm-pbsa procedure would naturally account for ligand concentration.


Is it possible to adjust the default ligand standard state (1M) to a user
defined value (or range of values)?
...



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Received on Wed Oct 18 2006 - 06:07:20 PDT
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