I would carefully read our recent article in Proteins where we list
these parameters and compare their performance to other Amber
parameters. We found that other parameter sets worked better for us.
http://www3.interscience.wiley.com/cgi-bin/abstract/112786705/
===================================================================
Carlos L. Simmerling, Ph.D.
Associate Professor Phone: (631) 632-1336
Center for Structural Biology Fax: (631) 632-1555
CMM Bldg, Room G80
Stony Brook University E-mail: carlos.simmerling.stonybrook.edu
Stony Brook, NY 11794-5115
===================================================================
Noriaki Okimoto wrote:
>Hi AMBER-users,
>
>I would like to use Garcia & Sanbonmatsu amber force field (PNAS (2002)
>99,2782-2787) and Nymer and Garcia force field (PNAS (2003)
>100,13934-13939). Does anybody know how to get these force field parameters?
>
>Thank you in advance
>
>Noriaki Okimoto
>
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Received on Thu Oct 12 2006 - 20:36:07 PDT
