AMBER: structure from MD

From: Fenghui Fan <fenghui_fan.yahoo.com>
Date: Tue, 26 Sep 2006 09:42:14 -0700 (PDT)

Dear all,

I want to get a structure from MD trajectory for
publication. In order to do this, should we use the
PDB file from the last rst file, or we get the average
structure from a plateau period, or we get the
structure by further energy minimized the average
structure?

I am looking forward to getting your reply.

Best regards.

Fenghui Fan

__________________________________________________
Do You Yahoo!?
Tired of spam? Yahoo! Mail has the best spam protection around
http://mail.yahoo.com
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Sep 27 2006 - 06:07:21 PDT
Custom Search