AMBER: the RMSD of MD

From: Fenghui Fan <fenghui_fan.yahoo.com>
Date: Sun, 24 Sep 2006 10:07:56 -0700 (PDT)

Dear all,

When I run a productive MD, the RMSD value in the RMSD
vs time curve gradually increases with the elongation
time, but it cannot reach plateau. For this reason, it
seems I cannot get a reasonable stble structure. Does
anyone can give us a explaination on this?

I am looking forward to ggetting your reply.

Best regards.

Fenghui Fan



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Received on Wed Sep 27 2006 - 06:07:05 PDT
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