AMBER: DPPC Bilayer size

From: Akshay Patny <akshay17.olemiss.edu>
Date: Thu, 14 Sep 2006 13:47:45 -0500

Hi All

 

I am trying to simulate a GPCR protein belonging to the rhodopsin family
with amino acid length of 320 residues. Also, I would be using the
pre-hydrated DPPC bilayer, can somebody suggest that for a GPCR protein of
roughly 320 aa, how big DPPC bilayer would be appropriate to use e.g. 128
DPPC bilayer is available from Peter Tieleman's website
http://moose.bio.ucalgary.ca/index.php?page=Main .

 

Thanks

 

Akshay Patny
Graduate Research Assistant
Faser Hall 417, Department of Medicinal Chemistry

Research Institute of Pharmaceutical Sciences
University of Mississippi
University, MS 38677
E-mail: akshay17.olemiss.edu
Tel: 662-915-1286 (office); Web: www.olemiss.edu

 



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Received on Sun Sep 17 2006 - 06:07:15 PDT
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