HI Mr. Yi,
If it is old format, make pdb file of the hydronium ion- load to xleap - add
charges, assign atom type properly (similar to the frc file) and save the
prep file.
Jiten
----- Original Message -----
From: "Myunggi Yi" <myunggi.gmail.com>
To: <amber.scripps.edu>
Sent: Friday, September 08, 2006 11:31 PM
Subject: Re: AMBER: hydronium ion parameters
>I found one.
>
> http://pharmacy.man.ac.uk/amber/
>
> However, it looks old format which I can't understand.
>
> How can I read or convert to amber 7-9 version?
>
>
>
> On 9/8/06, Myunggi Yi <myunggi.gmail.com> wrote:
>> Dear users,
>>
>> Where can I find hydronium ion parameters?
>>
>>
>> --
>> Best wishes,
>>
>> MYUNGGI YI
>> -----------------------------------------------------------------------
>> The AMBER Mail Reflector
>> To post, send mail to amber.scripps.edu
>> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
>>
>
>
> --
> Best wishes,
>
> MYUNGGI YI
> ==================================
> KLB 419
> Institute of Molecular Biophysics
> Florida State University
> Tallahassee, FL 32306
>
> Office: (850) 645-1334
> http://www.scs.fsu.edu/~myunggi
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Sun Sep 10 2006 - 06:07:24 PDT
