Re: AMBER: ligand file

From: David A. Case <case.scripps.edu>
Date: Mon, 4 Sep 2006 12:02:34 -0700

On Mon, Sep 04, 2006, Fenghui Fan wrote:
>
> When I use ANTECHAMBER to get the prepin file,
> ANTECHAMBER says the bondtype cannot be run. Will you
> tell me what should I do in oreder to get the cAMP
> prepin file.

1. As previously requested, please give the *exact* error message(s) when
reporting problems.

2. Antechamber requires input files with all hydrogens present; your file
just has heavy atoms, so you will have to manually add the necessary
hydrogens, for example using xleap.

....dac

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Received on Wed Sep 06 2006 - 06:07:11 PDT
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