they are calculated using the list of atoms that define the dihedral angles.
the same atoms are used for vdw and ele.
Jianhui wrote:
>Hi AMBER users,
>
>I looked up in the AMBER8 manual but didn't find the description about how the 1-4 interaction are calculated. For the 1-4 interaction calculation, how does AMBER8 know which are the 1-4 pairs? Does the 1-4 pairs for 1-4 Lennard-Jones and 1-4 Coulomb interaction the same? Thanks a lot.
>
>Best regards,
>
>Jianhui
>tianj.rpi.edu
>2006-08-30
>
>
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Received on Sun Sep 03 2006 - 06:07:06 PDT
