AMBER: amidine group/ gaff parameters

From: Prashanth Athri <athriprashanth.yahoo.com>
Date: Fri, 18 Aug 2006 12:00:17 -0700 (PDT)

Dear all,
 Have any of you calculated the parameters for benzamidine cation (protonated)?
 
                   NH2
                /
 (Ph)---C +
                \
                  NH2
 
 
 The atom types in 'gaff' do not exactly define the nitrogens.
 
 If so could you please point me to the appropriate publiation?
 If not do you have any suggestions as to the best way to proceed, apart form performing the caculations and adding it to gaff?
 
 Thanks in advance for your advice.
 
 -Prashanth Athri

                 
---------------------------------
Get your email and more, right on the new Yahoo.com
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Sun Aug 20 2006 - 06:07:21 PDT
Custom Search