Hi Seth,
I advise you to go through the AMBER tutorial 1
(
http://www.rosswalker.co.uk/tutorials/amber_workshop/) and generate your
structure with nucgen.
I read your attached pdb file and it seems like you did not use the
“AMBER” atoms naming convention for nucleic acids.
Franck
> Dear Amber Community,
>
> I have created a nucleic acid structure in pdb format using another
> program.
> The stucture "looks" fine in other viewers but in xleap there appear to be
> many
> extra unconnected atoms. I have attached a copy of the pdb file... in
> hopes
> someone may kindly take a quick look at it.
>
> Thanks,
> SETH
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Sun Aug 20 2006 - 06:07:11 PDT
