Thank you very much Francois!
>From: FyD <fyd.u-picardie.fr>
>Reply-To: amber.scripps.edu
>To: amber.scripps.edu
>Subject: Re: AMBER: PO2 in a DNA fragement, not a type in xleap? What canI
>do next?
>Date: Sat, 12 Aug 2006 21:09:29 +0200
>
>Quoting a a <patd_2.hotmail.com>:
>
>>I got to do the analysis for a fragement of DNA, with one of the DNA
>>base pair with only PO2 remained. When I load the pdb file to xleap,
>>it said it is not type, it seems that I have to define some parameters
>>for it. What can I do? Can I use antechamber? Or are there any
>>references values for the needed parameters that I could use?
>
>You might be interested in looking in R.E.DD.B.
>
>Derivation of new DNA nucleotides:
>http://www.u-picardie.fr/labo/lbpd/REDDB/up/F-59/
> with corresponding RESP inputs:
>http://www.u-picardie.fr/labo/lbpd/REDDB/up/F-59/input1.in
>http://www.u-picardie.fr/labo/lbpd/REDDB/up/F-59/input2.in
>
>http://www.u-picardie.fr/labo/lbpd/REDDB/up/F-58/
>http://www.u-picardie.fr/labo/lbpd/REDDB/up/F-57/
>
>Derivation of DNA FF topology database
>http://www.u-picardie.fr/labo/lbpd/REDDB/up/F-45/
>
>Derivation of DNA + RNA FF topology database
>http://www.u-picardie.fr/labo/lbpd/REDDB/up/F-60/
>
>regards, Francois
>
>
>-----------------------------------------------------------------------
>The AMBER Mail Reflector
>To post, send mail to amber.scripps.edu
>To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
_________________________________________________________________
Get 10Mb extra storage for MSN Hotmail. Subscribe Now!
http://join.msn.com/?pgmarket=en-hk
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Aug 16 2006 - 06:07:08 PDT
