On Thu, Aug 03, 2006, yxiong99 wrote:
> Which module will the polarizability parameter be used in? I am doing MMGBSA
> calculation. Whether is polarizability important for MMGBSA?
The polarizabilities are only used if ipol=1 is set in the input files. See
the general Amber paper (cited at the top of our web page) for more
information about polarizable potentials. Most biomolecular simulations use
non-polarizable charge models.
....dac
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Received on Sun Aug 06 2006 - 06:07:11 PDT
