You can use the addPdbAtomMap command in leap to make those atoms to be
recognized by leap.
addPdbAtomMap {
{ HG1 HG2 } { HG2 HG3 }
}
Best,
On Wed, 2 Aug 2006, AYTUG TUNCEL wrote:
> Hi all,
>
> Is there any way to convert brookhaven PDB format to AMBER pdb format. Because hydrogen atoms are represented by different nomenclature. for ex:
>
> in MET hydrogens of CG are represented by HG1 and HG2 but in AMBER format they are HG2 and HG3.
>
> thanks for any help
>
> Aytug
>
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--
Ilyas Yildirim
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Received on Sun Aug 06 2006 - 06:07:06 PDT
