Please ignore my previous mail.
my mm_pbsa.pl is working fine now
I did little mistake in setting the AMBERHOME.
Sorry for this inconvenience.
regards
Pravas
On 8/2/06, pkb bioinfo <pkstruct.gmail.com> wrote:
> Dear AMBER users,
>
> I have installed AMBER8 on linux cluster having
> AMD Opteron Machines with both Intel and Pathscale Compilers
>
> I have set the enviornment for AMBER in the .cshrc file as follows
>
> # AMBER8
> setenv AMBERHOME usr/people/iche/baral/software/AMBER8
> # AMBER8 / MPIRUN Memorysettings
> setenv P4_GLOBMEMSIZE 256000000
> setenv LD_LIBRARY_PATH
> /installadmin/mpich/1.2.6/intel/lib:/usr/lib64:{$LD_LIBRARY_PATH}
>
> # PATH
> setenv PATH /software/AMBER8/exe
>
> This works fine for sander and other programs but it gives error message for
> mm_pbsa.pl
> mm_pbsa_statitics.pl
>
> the error message is as follows
>
> Can't locate mm_pbsa_global.pm in .INC (.INC contains:
> usr/people/iche/baral/software/AMBER8/src/mm_pbsa
> /usr/lib64/perl5/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/5.8.5
> /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux-thread-multi
> /usr/lib64/perl5/site_perl/5.8.4/x86_64-linux-thread-multi
> /usr/lib64/perl5/site_perl/5.8.3/x86_64-linux-thread-multi
> /usr/lib64/perl5/site_perl/5.8.2/x86_64-linux-thread-multi
> /usr/lib64/perl5/site_perl/5.8.1/x86_64-linux-thread-multi
> /usr/lib64/perl5/site_perl/5.8.0/x86_64-linux-thread-multi
> /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4
> /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl/5.8.2
> /usr/lib/perl5/site_perl/5.8.1 /usr/lib/perl5/site_perl/5.8.0
> /usr/lib/perl5/site_perl
> /usr/lib64/perl5/vendor_perl/5.8.5/x86_64-linux-thread-multi
> /usr/lib64/perl5/vendor_perl/5.8.4/x86_64-linux-thread-multi
> /usr/lib64/perl5/vendor_perl/5.8.3/x86_64-linux-thread-multi
> /usr/lib64/perl5/vendor_perl/5.8.2/x86_64-linux-thread-multi
> /usr/lib64/perl5/vendor_perl/5.8.1/x86_64-linux-thread-multi
> /usr/lib64/perl5/vendor_perl/5.8.0/x86_64-linux-thread-multi
> /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4
> /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl/5.8.2
> /usr/lib/perl5/vendor_perl/5.8.1 /usr/lib/perl5/vendor_perl/5.8.0
> /usr/lib/perl5/vendor_perl .) at
> /usr/people/iche/baral/software/AMBER8/exe/mm_pbsa.pl line 23.
> BEGIN failed--compilation aborted at
> /usr/people/iche/baral/software/AMBER8/exe/mm_pbsa.pl line 23.
>
> So anybody please find out whats wrong in my system and kindly suggest me
> how to run mm_pbsa.pl script.Thanking you in advance
>
> Best regards
> Pravas
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Received on Sun Aug 06 2006 - 06:07:04 PDT
