I think I found a bug.
By removing "corr", I can avoid "segmentaion fault" problem.
The following input works.
vector v1 .12 .13 out cn.vec
If I use amber 7 format (without "corr" option before mask2), I can get cn.vec.
Then I can't use "analyze timecorr ..." command.
Is this a reported bug? or manual problem? or my problem?
On 6/20/06, Myunggi Yi <myunggi.gmail.com> wrote:
> Dear Amber users,
>
> I'm trying to extract vector information from a trajectory.
>
> The following is my ptraj input file.
>
> ====================
> trajin md2.trj.gz
> vector v1 .12 corr .13 out cn.vec
> go
> ====================
>
> I've got the "segmentation fault" message and the program crashed.
> I'm using Amber 8, and the trajectory doesn't have any problem.
> There was no problem, when I calculated 'distance', 'donor', 'acceptor',
> and 'hbond' , etc. .
>
> Any suggestion will be appreciated.
>
> --
> Best wishes,
>
> MYUNGGI YI
> ==================================
> KLB 419
> Institute of Molecular Biophysics
> Florida State University
> Tallahassee, FL 32306
>
> Office: (850) 645-1334
> http://www.scs.fsu.edu/~myunggi
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
>
--
Best wishes,
MYUNGGI YI
==================================
KLB 419
Institute of Molecular Biophysics
Florida State University
Tallahassee, FL 32306
Office: (850) 645-1334
http://www.scs.fsu.edu/~myunggi
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Jun 21 2006 - 06:07:14 PDT
