AMBER: help with custom RNA molecule

From: <>
Date: Mon, 19 Jun 2006 14:55:59 -0400

Dear All,

Using LEaP... I am currently trying to create an RNA molecule with 2' to 5'
linkages. I started with standard residues and modified them. Then I created a
.pdb file using nucgen which I then modified by replacing the standard residues
with the new ones I had created.

I can view each residue individually using the edit command but when trying to
view the newly modified .pdb file... I get a bunch of garbeled lines. Any ideas
as to what mistakes I am making?

Seth Lilavivat
Georgia Institute of Technology
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Received on Wed Jun 21 2006 - 06:07:11 PDT
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