Re: AMBER: Force units in forcedump.dat

From: darden <darden.gamera.niehs.nih.gov>
Date: Wed, 31 May 2006 13:53:34 -0400 (EDT)

Steven
The units should be in kcals per mole per angstrom. To verify this,
note that the debug module allows you to check forces on an atom (or a
set of atoms). It does this by numerical differentiation---delta E (kcals
per mole) over delta x,y,or z (angstroms). These results should match
(within the numerical diff approximation) the forces given in the dump.
Tom Darden

On Wed, 31 May 2006, Steven Winfield wrote:

> Dear Amber users,
>
> Can anyone tell me the correct units for the forces appearing in the 'Total
> Force' section of the debug file 'forcedump.dat', which is produced by sander
> when do_debugf =1 and dumpfrc = 1 in the debugf namelist?
>
> Thanks,
>
> Steven Winfield.
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
>
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Sun Jun 04 2006 - 06:07:07 PDT
Custom Search