Hi,
I am trying to use the new united atom force field in amber9 (leaprc.ff03ua)
in combination with generalized Born solvation model.
It seems the paper is not out yet but I wonder if I can use ff03ua with GB
solvation. If so, what would be the "good" GB parameter for typical amino
acid such as igb=1, 2, etc..?
Also, can I use surface area correction here? (GBSA=1 option).
Thank you.
Soo
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Received on Fri May 26 2006 - 21:05:20 PDT
